PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50551-50600 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 93.7898 | 88.6447 | 99.5690 | 61.2364 | 484 | 62 | 462 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 87.4518 | 77.8195 | 99.8053 | 29.5610 | 1035 | 295 | 1025 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m1_e0 | homalt | 97.1395 | 94.7635 | 99.6377 | 74.6207 | 561 | 31 | 550 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e0 | homalt | 97.2307 | 94.9264 | 99.6497 | 75.8051 | 580 | 31 | 569 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l100_m2_e1 | homalt | 97.1870 | 94.8387 | 99.6546 | 75.9352 | 588 | 32 | 577 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m1_e0 | homalt | 97.5113 | 95.7020 | 99.3902 | 79.6400 | 334 | 15 | 326 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e0 | homalt | 97.6160 | 95.8791 | 99.4169 | 80.7412 | 349 | 15 | 341 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D1_5 | map_l125_m2_e1 | homalt | 97.5281 | 95.6989 | 99.4286 | 80.7692 | 356 | 16 | 348 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | decoy | * | 0.0000 | 0.0000 | 99.8955 | 0 | 1 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.8893 | 0 | 0 | 0 | 2 | 1 | 50.0000 | ||
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 63.5401 | 48.8372 | 90.9091 | 71.7949 | 21 | 22 | 20 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.6755 | 2 | 2 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.5455 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 12.7932 | 6.8650 | 93.7500 | 75.5725 | 30 | 407 | 30 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 68.5368 | 52.3702 | 99.1416 | 33.0460 | 232 | 211 | 231 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | * | 85.7143 | 83.3333 | 88.2353 | 97.4203 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m1_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.7391 | 11 | 0 | 11 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | * | 88.3721 | 86.3636 | 90.4762 | 97.1925 | 19 | 3 | 19 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.5460 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | * | 88.3721 | 86.3636 | 90.4762 | 97.2477 | 19 | 3 | 19 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | map_l250_m2_e1 | het | 93.3333 | 100.0000 | 87.5000 | 97.5904 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | * | 84.8485 | 82.3529 | 87.5000 | 57.8947 | 14 | 3 | 14 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | D6_15 | tech_badpromoters | het | 90.9091 | 100.0000 | 83.3333 | 55.5556 | 10 | 0 | 10 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 20.0000 | 12.0000 | 60.0000 | 83.3333 | 3 | 22 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 20.6897 | 12.5000 | 60.0000 | 75.0000 | 3 | 21 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 38.3912 | 24.5902 | 87.5000 | 85.5856 | 15 | 46 | 14 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 69.6011 | 56.0976 | 91.6667 | 72.4138 | 23 | 18 | 22 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 7.6923 | 0.0000 | 97.8022 | 2 | 24 | 0 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 66.6667 | 0.0000 | 97.7011 | 2 | 1 | 0 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | * | 76.1905 | 72.7273 | 80.0000 | 91.2281 | 8 | 3 | 8 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l100_m0_e0 | het | 82.3529 | 87.5000 | 77.7778 | 91.4286 | 7 | 1 | 7 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | * | 66.6667 | 66.6667 | 66.6667 | 93.2584 | 4 | 2 | 4 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l125_m0_e0 | het | 75.0000 | 100.0000 | 60.0000 | 93.8272 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | * | 50.0000 | 50.0000 | 50.0000 | 94.8052 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I16_PLUS | map_l150_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.3662 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 84.9850 | 73.9327 | 99.9224 | 57.1120 | 2615 | 922 | 2576 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 7.1429 | 4.0000 | 33.3333 | 86.3636 | 1 | 24 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 40.0000 | 50.0000 | 33.3333 | 85.0000 | 1 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m1_e0 | homalt | 94.2529 | 93.1818 | 95.3488 | 91.6988 | 41 | 3 | 41 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e0 | homalt | 94.3820 | 93.3333 | 95.4545 | 92.6789 | 42 | 3 | 42 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | map_l250_m2_e1 | homalt | 94.5055 | 93.4783 | 95.5556 | 92.6948 | 43 | 3 | 43 | 2 | 1 | 50.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | * | 82.9268 | 77.2727 | 89.4737 | 53.6585 | 17 | 5 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 60.0000 | 8 | 0 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 43.5897 | 28.8136 | 89.4737 | 70.7692 | 17 | 42 | 17 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 64.6690 | 47.9326 | 99.3631 | 60.5528 | 313 | 340 | 312 | 2 | 2 | 100.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 90.4762 | 0 | 24 | 0 | 2 | 2 | 100.0000 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 4.3478 | 0.0000 | 96.8254 | 4 | 88 | 0 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 44.4444 | 0.0000 | 96.6667 | 4 | 5 | 0 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7414 | 97.6021 | 99.9075 | 50.0923 | 2198 | 54 | 2161 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0508 | 98.2646 | 99.8497 | 54.9729 | 1359 | 24 | 1329 | 2 | 0 | 0.0000 | |