PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FP FP gt% FP ma
5001-5050 / 86044 show all
mlin-fermikitSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
96.5517
93.3333
100.0000
85.5670
1411400
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
mlin-fermikitSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
68.7500
50500
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
50.0000
50500
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
100.0000
100.0000
100.0000
66.6667
10100
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
0.0000
0.0000
00000
mlin-fermikitSNPtvlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
mlin-fermikitSNPtvmap_l100_m0_e0hetalt
31.5789
18.7500
100.0000
80.0000
313300
mlin-fermikitSNPtvmap_l100_m1_e0hetalt
56.1404
39.0244
100.0000
68.6275
16251600
mlin-fermikitSNPtvmap_l100_m2_e0hetalt
57.6271
40.4762
100.0000
71.6667
17251700
mlin-fermikitSNPtvmap_l100_m2_e1hetalt
59.0164
41.8605
100.0000
70.9677
18251800
mlin-fermikitSNPtvmap_l125_m0_e0hetalt
0.0000
100.0000
09000
mlin-fermikitSNPtvmap_l125_m1_e0hetalt
46.1538
30.0000
100.0000
68.9655
921900
mlin-fermikitSNPtvmap_l125_m2_e0hetalt
46.1538
30.0000
100.0000
76.3158
921900
mlin-fermikitSNPtvmap_l125_m2_e1hetalt
46.1538
30.0000
100.0000
76.9231
921900
mlin-fermikitSNPtvmap_l150_m0_e0hetalt
0.0000
100.0000
03000
mlin-fermikitSNPtvmap_l150_m1_e0hetalt
46.1538
30.0000
100.0000
68.4211
614600
mlin-fermikitSNPtvmap_l150_m2_e0hetalt
46.1538
30.0000
100.0000
73.9130
614600
mlin-fermikitSNPtvmap_l150_m2_e1hetalt
46.1538
30.0000
100.0000
75.0000
614600
mlin-fermikitSNPtvmap_l250_m0_e0hetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvmap_l250_m1_e0hetalt
0.0000
100.0000
04000
mlin-fermikitSNPtvmap_l250_m2_e0hetalt
0.0000
100.0000
05000
mlin-fermikitSNPtvmap_l250_m2_e1hetalt
0.0000
100.0000
05000
mlin-fermikitSNPtvmap_sirenhetalt
72.4409
56.7901
100.0000
65.9259
46354600
mlin-fermikitSNPtvsegduphetalt
100.0000
100.0000
100.0000
92.8571
70700
mlin-fermikitSNPtvsegdupwithalt*
0.0000
100.0000
00000
mlin-fermikitSNPtvsegdupwithalthet
0.0000
100.0000
00000
mlin-fermikitSNPtvsegdupwithalthetalt
0.0000
100.0000
00000
mlin-fermikitSNPtvsegdupwithalthomalt
0.0000
100.0000
00000
mlin-fermikitSNPtvtech_badpromotershetalt
0.0000
0.0000
0.0000
00000
ndellapenna-hhgaINDEL*decoy*
94.7368
90.0000
100.0000
99.9905
91900
ndellapenna-hhgaINDEL*decoyhet
90.9091
83.3333
100.0000
99.9316
51600
ndellapenna-hhgaINDEL*decoyhetalt
100.0000
100.0000
10000
ndellapenna-hhgaINDEL*decoyhomalt
100.0000
100.0000
100.0000
99.9319
30300
ndellapenna-hhgaINDEL*func_cdshetalt
88.8889
80.0000
100.0000
60.0000
41400
ndellapenna-hhgaINDEL*func_cdshomalt
100.0000
100.0000
100.0000
35.6125
226022600
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
80.0000
66.6667
100.0000
98.9899
21100
ndellapenna-hhgaINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
57.1429
40.0000
100.0000
99.8219
23200
qzeng-customINDELC16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
0.0000
100.0000
00000
qzeng-customINDELC16_PLUSmap_l100_m0_e0hetalt
0.0000
0.0000
0.0000
00000