PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50401-50450 / 86044 show all | |||||||||||||||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 33.3333 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | map_siren | * | 0.0000 | 0.0000 | 33.3333 | 94.8276 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 33.3333 | 89.2857 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C6_15 | * | hetalt | 0.0000 | 0.0000 | 50.0000 | 98.0000 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | HG002complexvar | hetalt | 0.0000 | 0.0000 | 50.0000 | 96.1538 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 50.0000 | 97.0149 | 0 | 0 | 2 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 0.0000 | 33.3333 | 96.7742 | 0 | 0 | 1 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D1_5 | func_cds | * | 98.4227 | 98.1132 | 98.7342 | 40.6015 | 156 | 3 | 156 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | func_cds | het | 98.2456 | 98.8235 | 97.6744 | 47.5610 | 84 | 1 | 84 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.0553 | 96.4706 | 97.6471 | 94.1661 | 82 | 3 | 83 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 57.9710 | 51.2821 | 66.6667 | 62.5000 | 20 | 19 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 69.4006 | 59.4595 | 83.3333 | 67.5676 | 22 | 15 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 61.1189 | 45.6140 | 92.5926 | 99.6543 | 26 | 31 | 25 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 66.6667 | 66.6667 | 66.6667 | 99.8717 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l100_m0_e0 | homalt | 79.0698 | 70.8333 | 89.4737 | 91.9831 | 17 | 7 | 17 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l125_m0_e0 | homalt | 78.2609 | 75.0000 | 81.8182 | 93.9891 | 9 | 3 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m0_e0 | * | 78.8060 | 68.7500 | 92.3077 | 91.5309 | 22 | 10 | 24 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m1_e0 | homalt | 78.2609 | 69.2308 | 90.0000 | 92.1569 | 18 | 8 | 18 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e0 | homalt | 80.0000 | 71.4286 | 90.9091 | 92.0000 | 20 | 8 | 20 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l150_m2_e1 | homalt | 80.7692 | 72.4138 | 91.3043 | 91.7563 | 21 | 8 | 21 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m1_e0 | * | 62.0690 | 50.0000 | 81.8182 | 96.2199 | 9 | 9 | 9 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e0 | * | 62.8571 | 50.0000 | 84.6154 | 96.0366 | 11 | 11 | 11 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_l250_m2_e1 | * | 62.8571 | 50.0000 | 84.6154 | 96.0961 | 11 | 11 | 11 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | D6_15 | map_siren | hetalt | 64.3533 | 51.5152 | 85.7143 | 76.2712 | 51 | 48 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 67.7725 | 56.5217 | 84.6154 | 31.5789 | 13 | 10 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0149 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 66.6667 | 100.0000 | 50.0000 | 97.0370 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 60.0000 | 44.1176 | 93.7500 | 72.6496 | 30 | 38 | 30 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | hetalt | 31.5789 | 21.4286 | 60.0000 | 98.9562 | 3 | 11 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.0150 | 75.9690 | 99.1228 | 89.0173 | 196 | 62 | 226 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | * | 38.1503 | 25.5814 | 75.0000 | 63.6364 | 11 | 32 | 6 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | het | 39.0244 | 27.5862 | 66.6667 | 64.7059 | 8 | 21 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 42.3077 | 28.2051 | 84.6154 | 70.4545 | 11 | 28 | 11 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 34.0426 | 21.6216 | 80.0000 | 86.6667 | 8 | 29 | 8 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 54.9650 | 39.1892 | 92.0000 | 88.1517 | 29 | 45 | 23 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 22.9356 | 12.9887 | 97.9381 | 34.8993 | 103 | 690 | 95 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 71.0383 | 61.9048 | 83.3333 | 36.8421 | 13 | 8 | 10 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | * | 42.7650 | 28.1553 | 88.8889 | 96.7332 | 29 | 74 | 16 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l100_m0_e0 | het | 47.3684 | 33.3333 | 81.8182 | 96.8208 | 20 | 40 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | * | 48.0801 | 34.0426 | 81.8182 | 97.4713 | 16 | 31 | 9 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m0_e0 | het | 46.5116 | 34.4828 | 71.4286 | 97.4638 | 10 | 19 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | hetalt | 58.4071 | 42.8571 | 91.6667 | 93.2394 | 21 | 28 | 22 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 51.0638 | 44.4444 | 60.0000 | 98.6226 | 4 | 5 | 3 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I1_5 | map_l150_m0_e0 | homalt | 85.9772 | 77.6119 | 96.3636 | 94.7267 | 52 | 15 | 53 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 49.8210 | 34.1176 | 92.3077 | 67.9012 | 29 | 56 | 24 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 22.8155 | 12.9477 | 95.9184 | 63.1579 | 47 | 316 | 47 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 37.8549 | 24.4898 | 83.3333 | 85.3659 | 12 | 37 | 10 | 2 | 1 | 50.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 13.4283 | 7.2848 | 85.7143 | 44.0000 | 11 | 140 | 12 | 2 | 2 | 100.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.2692 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | homalt | 25.0000 | 15.1515 | 71.4286 | 93.7500 | 5 | 28 | 5 | 2 | 0 | 0.0000 | |