PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
50301-50350 / 86044 show all | |||||||||||||||
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.2353 | 88.2353 | 88.2353 | 98.6625 | 15 | 2 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 97.8481 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | * | 85.7143 | 83.3333 | 88.2353 | 98.6688 | 15 | 3 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 97.8589 | 15 | 1 | 15 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l125_m0_e0 | homalt | 96.5517 | 94.5946 | 98.5915 | 83.6217 | 140 | 8 | 140 | 2 | 1 | 50.0000 | |
| jpowers-varprowl | INDEL | D1_5 | map_l150_m0_e0 | homalt | 95.8084 | 94.1176 | 97.5610 | 87.9412 | 80 | 5 | 80 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.8082 | 99.6679 | 99.9488 | 76.8939 | 3902 | 13 | 3902 | 2 | 1 | 50.0000 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9407 | 99.9110 | 99.9703 | 35.3939 | 6739 | 6 | 6739 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | * | tech_badpromoters | * | 98.4026 | 98.0892 | 98.7179 | 48.6842 | 154 | 3 | 154 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 46.7105 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | ti | map_l250_m0_e0 | homalt | 99.1945 | 98.8532 | 99.5381 | 89.7296 | 431 | 5 | 431 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | ti | map_l250_m1_e0 | homalt | 99.3746 | 98.8799 | 99.8743 | 84.2895 | 1589 | 18 | 1589 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e0 | homalt | 99.4256 | 98.9708 | 99.8846 | 85.5643 | 1731 | 18 | 1731 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | ti | map_l250_m2_e1 | homalt | 99.4331 | 98.9842 | 99.8861 | 85.6066 | 1754 | 18 | 1754 | 2 | 2 | 100.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8912 | 99.8550 | 99.9274 | 36.4538 | 2754 | 4 | 2754 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.4483 | 86.2069 | 97.3684 | 99.9056 | 75 | 12 | 74 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | homalt | 97.2222 | 96.3303 | 98.1308 | 95.0256 | 105 | 4 | 105 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | homalt | 97.3684 | 96.5217 | 98.2301 | 95.4673 | 111 | 4 | 111 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | homalt | 97.3913 | 96.5517 | 98.2456 | 95.5277 | 112 | 4 | 112 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2070 | 98.8739 | 99.5423 | 76.1072 | 439 | 5 | 435 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7238 | 100.0000 | 99.4490 | 62.8074 | 361 | 0 | 361 | 2 | 1 | 50.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.6757 | 99.7835 | 99.5680 | 64.0528 | 461 | 1 | 461 | 2 | 2 | 100.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.8636 | 100.0000 | 97.7528 | 84.9916 | 87 | 0 | 87 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 87.7451 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | map_l250_m0_e0 | homalt | 96.8254 | 94.8187 | 98.9189 | 93.7500 | 183 | 10 | 183 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7705 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.6047 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 28.5714 | 25.0000 | 33.3333 | 98.7395 | 1 | 3 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.5646 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 20.6573 | 11.7647 | 84.6154 | 90.8451 | 12 | 90 | 11 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | * | 66.6667 | 75.0000 | 60.0000 | 99.5155 | 3 | 1 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 99.2212 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | * | 72.7273 | 80.0000 | 66.6667 | 99.4356 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 99.2504 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | * | 72.7273 | 80.0000 | 66.6667 | 99.4398 | 4 | 1 | 4 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 99.2548 | 3 | 0 | 3 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 10.3896 | 5.6338 | 66.6667 | 80.6452 | 4 | 67 | 4 | 2 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.5348 | 2 | 2 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2684 | 2 | 0 | 2 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 7.1006 | 3.7267 | 75.0000 | 81.8182 | 6 | 155 | 6 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 9.8039 | 5.2083 | 83.3333 | 89.0909 | 10 | 182 | 10 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | * | 88.8889 | 88.8889 | 88.8889 | 97.3174 | 16 | 2 | 16 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m1_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.7966 | 11 | 0 | 11 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.1166 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e0 | het | 93.3333 | 100.0000 | 87.5000 | 97.6190 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.1795 | 20 | 2 | 20 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | D6_15 | map_l250_m2_e1 | het | 93.3333 | 100.0000 | 87.5000 | 97.6710 | 14 | 0 | 14 | 2 | 1 | 50.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 55.0459 | 40.0000 | 88.2353 | 78.7500 | 14 | 21 | 15 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 76.3006 | 68.7500 | 85.7143 | 66.6667 | 11 | 5 | 12 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 98.3051 | 0 | 3 | 0 | 2 | 2 | 100.0000 | ||