PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
4601-4650 / 86044 show all
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8372
98.8372
98.8372
63.5593
255325533
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
97.2603
95.9459
98.6111
81.4433
7137111
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.7250
99.6337
99.8165
77.9531
544254411
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
97.2973
97.2973
97.2973
87.8289
3613611
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
94.3538
99.2084
89.9522
60.9346
37633764242
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200hetalt
83.4621
71.8941
99.4667
29.5113
35313837322
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_51to200homalt
75.4098
97.1831
61.6071
52.3404
692694343
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10hetalt
98.1559
97.0803
99.2556
71.3982
3991240033
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9362
99.9607
99.9116
54.3466
1017441017499
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50hetalt
99.1916
98.5934
99.7970
32.9401
147221147533
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9319
100.0000
99.8638
51.2807
36660366655
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_51to200homalt
99.4924
99.4924
99.4924
60.6000
196119611
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50hetalt
99.6750
99.5671
99.7831
29.8326
460246011
100.0000
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_51to200homalt
92.8571
100.0000
86.6667
58.3333
1301322
100.0000
dgrover-gatkINDELD1_5map_l100_m0_e0homalt
99.0291
98.8372
99.2218
84.4337
255325522
100.0000
dgrover-gatkINDELD1_5map_l100_m1_e0homalt
99.4073
99.1554
99.6604
83.4225
587558722
100.0000
dgrover-gatkINDELD1_5map_l100_m2_e0homalt
99.4258
99.1817
99.6711
84.0629
606560622
100.0000
dgrover-gatkINDELD1_5map_l100_m2_e1homalt
99.4341
99.1935
99.6759
84.1347
615561522
100.0000
dgrover-gatkINDELD1_5map_l125_m0_e0homalt
98.3051
97.9730
98.6395
87.7704
145314522
100.0000
dgrover-gatkINDELD1_5map_l125_m1_e0homalt
99.1379
98.8539
99.4236
85.6730
345434522
100.0000
dgrover-gatkINDELD1_5map_l125_m2_e0homalt
99.1736
98.9011
99.4475
86.3961
360436022
100.0000
dgrover-gatkINDELD1_5map_l125_m2_e1homalt
99.1914
98.9247
99.4595
86.3921
368436822
100.0000
dgrover-gatkINDELD1_5map_l150_m0_e0homalt
98.2249
97.6471
98.8095
90.8795
8328311
100.0000
dgrover-gatkINDELD1_5map_l150_m1_e0homalt
98.8962
98.2456
99.5556
87.8837
224422411
100.0000
dgrover-gatkINDELD1_5map_l150_m2_e0homalt
98.9605
98.3471
99.5816
88.5151
238423811
100.0000
dgrover-gatkINDELD1_5map_l150_m2_e1homalt
98.7854
98.3871
99.1870
88.4507
244424422
100.0000
dgrover-gatkINDELD1_5map_sirenhomalt
99.5720
99.4863
99.6578
81.5178
11626116544
100.0000
dgrover-gatkINDELD1_5segduphomalt
99.7222
100.0000
99.4460
94.5665
359035922
100.0000
dgrover-gatkINDELD6_15HG002complexvarhomalt
99.4048
100.0000
98.8166
62.8338
1169011691414
100.0000
dgrover-gatkINDELD6_15HG002compoundhethomalt
26.9663
100.0000
15.5844
70.3846
24024130130
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
98.8506
100.0000
97.7273
77.8894
4304311
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7394
99.6528
99.8261
69.1854
574257411
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
96.3131
94.5455
98.1481
61.9718
5235311
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8974
100.0000
99.7951
67.2263
487048711
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
93.7973
90.9091
96.8750
61.9048
3033111
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
92.7350
99.3135
86.9739
48.2902
43434346565
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
97.7832
99.8930
95.7607
54.8681
280132801124124
100.0000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.7706
100.0000
97.5710
56.3208
2370023705959
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
98.3863
99.8976
96.9200
41.5335
1951219516262
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200hetalt
88.2389
79.1284
99.7203
27.1152
69018271322
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_diTR_51to200homalt
83.4646
98.7578
72.2727
35.4839
15921596161
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10hetalt
97.2973
97.2973
97.2973
62.6263
3613611
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50hetalt
98.9371
98.3926
99.4876
28.3354
116319116566
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7650
99.8824
99.6479
51.0626
849184933
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.7975
99.7110
99.8843
36.2126
17255172622
100.0000
dgrover-gatkINDELD6_15lowcmp_SimpleRepeat_triTR_11to50homalt
99.7748
100.0000
99.5506
34.4624
443044322
100.0000
dgrover-gatkINDELD6_15segduphomalt
96.1538
100.0000
92.5926
92.4051
5005044
100.0000
dgrover-gatkINDELI16_PLUS*hetalt
96.2521
92.9933
99.7475
58.1926
1951147197555
100.0000
dgrover-gatkINDELI16_PLUSHG002complexvar*
98.9256
98.4721
99.3832
67.6397
128920128988
100.0000
dgrover-gatkINDELI16_PLUSHG002complexvarhetalt
97.8993
96.4179
99.4269
69.1424
3231234722
100.0000