PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
4451-4500 / 86044 show all
egarrison-hhgaSNPtvHG002complexvarhetalt
98.7097
98.7097
98.7097
42.0561
306430644
100.0000
egarrison-hhgaSNPtvHG002compoundhethetalt
99.5928
99.3039
99.8833
23.6185
856685611
100.0000
egarrison-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhetalt
96.2963
100.0000
92.8571
80.2817
1301311
100.0000
egarrison-hhgaSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhomalt
91.5663
92.6829
90.4762
89.2308
3833844
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200*
85.1064
76.9231
95.2381
94.1989
2062011
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_diTR_51to200homalt
82.3529
77.7778
87.5000
91.4894
72711
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7811
99.6656
99.8969
59.9463
387413387444
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
90.9091
100.0000
83.3333
64.7059
50511
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.6549
99.4561
99.8544
38.0748
274315274344
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
72.7273
66.6667
80.0000
94.1860
42411
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7240
99.4783
99.9709
35.3959
343218343411
100.0000
egarrison-hhgaSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.6482
99.3452
99.9530
35.3102
212414212611
100.0000
egarrison-hhgaSNPtvmap_l100_m0_e0hetalt
90.3226
87.5000
93.3333
81.0127
1421411
100.0000
egarrison-hhgaSNPtvmap_l100_m1_e0hetalt
95.0000
92.6829
97.4359
77.5862
3833811
100.0000
egarrison-hhgaSNPtvmap_l100_m2_e0hetalt
95.1220
92.8571
97.5000
79.6954
3933911
100.0000
egarrison-hhgaSNPtvmap_l100_m2_e1hetalt
95.2381
93.0233
97.5610
79.3970
4034011
100.0000
egarrison-hhgaSNPtvmap_l125_m0_e0homalt
99.6615
99.4147
99.9095
69.6595
220813220822
100.0000
egarrison-hhgaSNPtvmap_l125_m1_e0homalt
99.7864
99.6587
99.9145
66.8895
584020584055
100.0000
egarrison-hhgaSNPtvmap_l125_m2_e0homalt
99.7920
99.6676
99.9167
69.5036
599720599755
100.0000
egarrison-hhgaSNPtvmap_l125_m2_e1homalt
99.7940
99.6707
99.9175
69.5482
605420605455
100.0000
egarrison-hhgaSNPtvmap_l150_m0_e0homalt
99.6224
99.3223
99.9242
75.6143
13199131911
100.0000
egarrison-hhgaSNPtvmap_l150_m1_e0homalt
99.7589
99.5945
99.9237
71.1191
393016393033
100.0000
egarrison-hhgaSNPtvmap_l150_m2_e0homalt
99.7670
99.6081
99.9263
73.5886
406716406733
100.0000
egarrison-hhgaSNPtvmap_l150_m2_e1homalt
99.7698
99.6130
99.9272
73.5901
411816411833
100.0000
egarrison-hhgaSNPtvmap_l250_m0_e0homalt
98.9583
98.4456
99.4764
92.2735
190319011
100.0000
egarrison-hhgaSNPtvmap_l250_m1_e0homalt
99.4138
99.0654
99.7647
86.4065
848884822
100.0000
egarrison-hhgaSNPtvmap_l250_m2_e0homalt
99.4647
99.1462
99.7852
87.5551
929892922
100.0000
egarrison-hhgaSNPtvmap_l250_m2_e1homalt
99.4698
99.1543
99.7872
87.6462
938893822
100.0000
egarrison-hhgaSNPtvmap_sirenhetalt
96.2025
93.8272
98.7013
75.7098
7657611
100.0000
egarrison-hhgaSNPtvsegduphomalt
99.7379
99.8765
99.5996
90.3915
3234432341313
100.0000
eyeh-varpipeINDEL*decoyhomalt
48.8889
33.3333
91.6667
99.7340
121111
100.0000
eyeh-varpipeINDEL*func_cdshetalt
69.7674
60.0000
83.3333
72.7273
32511
100.0000
eyeh-varpipeINDEL*func_cdshomalt
97.5248
95.5752
99.5556
29.9065
2161022411
100.0000
eyeh-varpipeINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
94.3627
91.6667
97.2222
98.4307
1113511
100.0000
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
56.2806
41.3174
88.2353
79.4355
69981351818
100.0000
eyeh-varpipeINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
98.5507
100.0000
97.1429
98.4047
1003411
100.0000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_homopolymer_6to10hetalt
88.1005
80.0000
98.0263
81.2243
42810713412727
100.0000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_homopolymer_gt10hetalt
53.3333
37.5000
92.3077
99.6143
6106055
100.0000
eyeh-varpipeINDEL*lowcmp_SimpleRepeat_triTR_51to200hetalt
7.6596
4.0000
90.0000
81.1321
5120911
100.0000
eyeh-varpipeINDEL*map_l150_m0_e0homalt
97.2434
98.1707
96.3333
91.9420
16132891111
100.0000
eyeh-varpipeINDEL*map_l150_m1_e0homalt
97.1058
96.9697
97.2424
89.3062
448146701919
100.0000
eyeh-varpipeINDEL*map_l150_m2_e0homalt
96.9842
97.0894
96.8792
89.5683
467147142323
100.0000
eyeh-varpipeINDEL*map_l150_m2_e1homalt
96.9748
97.1545
96.7957
89.6318
478147252424
100.0000
eyeh-varpipeINDEL*map_l250_m0_e0homalt
98.1818
100.0000
96.4286
97.2305
2505422
100.0000
eyeh-varpipeINDEL*map_l250_m1_e0homalt
97.3105
98.1651
96.4706
95.2843
107216466
100.0000
eyeh-varpipeINDEL*map_l250_m2_e0homalt
96.7898
97.3913
96.1957
95.4410
112317777
100.0000
eyeh-varpipeINDEL*map_l250_m2_e1homalt
96.8318
97.4138
96.2567
95.5005
113318077
100.0000
eyeh-varpipeINDEL*segduphetalt
51.6497
35.3846
95.5882
96.8649
46846533
100.0000
eyeh-varpipeINDEL*tech_badpromoters*
91.9970
89.4737
94.6667
86.9110
6887144
100.0000
eyeh-varpipeINDEL*tech_badpromotershet
91.9609
87.1795
97.2973
46.3768
3453611
100.0000