PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
401-450 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 96.7499 | 93.8209 | 99.8677 | 23.9437 | 744 | 49 | 755 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6475 | 99.7647 | 99.5305 | 49.7048 | 848 | 2 | 848 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | * | hetalt | 96.4666 | 93.1857 | 99.9870 | 32.1144 | 7617 | 557 | 7666 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | hetalt | 97.2668 | 94.7680 | 99.9010 | 47.1204 | 960 | 53 | 1009 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002complexvar | homalt | 99.4894 | 100.0000 | 98.9839 | 62.5911 | 1169 | 0 | 1169 | 12 | 12 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | HG002compoundhet | homalt | 25.1309 | 100.0000 | 14.3713 | 65.4244 | 24 | 0 | 24 | 143 | 143 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 82.1053 | 96.8944 | 71.2329 | 36.7052 | 156 | 5 | 156 | 63 | 63 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 92.1644 | 85.5030 | 99.9515 | 30.1491 | 2023 | 343 | 2061 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 67.7708 | 83.7838 | 56.8966 | 68.7050 | 124 | 24 | 99 | 75 | 75 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 81.1064 | 76.2066 | 86.6795 | 41.5020 | 900 | 281 | 898 | 138 | 138 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.4144 | 93.0885 | 99.9868 | 28.9050 | 7502 | 557 | 7550 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.4144 | 93.0885 | 99.9868 | 28.9050 | 7502 | 557 | 7550 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 92.1109 | 98.8558 | 86.2275 | 47.5941 | 432 | 5 | 432 | 69 | 69 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 94.5545 | 91.3876 | 97.9487 | 73.9305 | 191 | 18 | 191 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 93.8776 | 90.5512 | 97.4576 | 75.5694 | 115 | 12 | 115 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 64.4901 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8506 | 100.0000 | 97.7273 | 76.5957 | 43 | 0 | 43 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.6854 | 97.7431 | 99.6460 | 66.1879 | 563 | 13 | 563 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I16_PLUS | map_siren | homalt | 73.6842 | 66.6667 | 82.3529 | 70.6897 | 14 | 7 | 14 | 3 | 3 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 80.9710 | 68.2936 | 99.4281 | 31.4166 | 7584 | 3521 | 7649 | 44 | 44 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 95.8333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 83.2118 | 71.5131 | 99.4866 | 35.3667 | 7491 | 2984 | 7558 | 39 | 39 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | * | hetalt | 98.3546 | 97.0076 | 99.7395 | 72.4903 | 10860 | 335 | 11105 | 29 | 29 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002complexvar | hetalt | 98.0883 | 96.9293 | 99.2754 | 77.2008 | 1673 | 53 | 1918 | 14 | 14 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | HG002compoundhet | hetalt | 98.4111 | 97.0028 | 99.8609 | 64.1248 | 10842 | 335 | 10768 | 15 | 15 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 66.6667 | 66.6667 | 66.6667 | 97.8873 | 2 | 1 | 2 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 96.1107 | 93.3110 | 99.0836 | 51.0924 | 837 | 60 | 865 | 8 | 8 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 87.7721 | 78.5408 | 99.4624 | 73.8764 | 183 | 50 | 185 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 98.9113 | 98.1812 | 99.6524 | 74.7228 | 5830 | 108 | 6020 | 21 | 21 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8903 | 99.8539 | 99.9268 | 27.2049 | 2734 | 4 | 2730 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 98.5556 | 97.4729 | 99.6627 | 53.9495 | 5747 | 149 | 5909 | 20 | 20 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 81.8879 | 70.7317 | 97.2222 | 86.6171 | 29 | 12 | 35 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 95.8706 | 95.2381 | 96.5116 | 64.1667 | 80 | 4 | 83 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.6916 | 98.2143 | 99.1736 | 83.4247 | 110 | 2 | 120 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 79.1393 | 65.8683 | 99.1071 | 71.1340 | 110 | 57 | 111 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 96.0116 | 93.0380 | 99.1817 | 48.3080 | 588 | 44 | 606 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 98.7188 | 97.6759 | 99.7842 | 42.6822 | 4539 | 108 | 4623 | 10 | 10 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 99.1258 | 98.3867 | 99.8761 | 42.1136 | 3964 | 65 | 4032 | 5 | 5 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 98.6787 | 97.6320 | 99.7480 | 46.7338 | 4659 | 113 | 4750 | 12 | 12 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 98.5556 | 97.4729 | 99.6627 | 53.9495 | 5747 | 149 | 5909 | 20 | 20 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 98.9430 | 98.1340 | 99.7654 | 46.0565 | 3734 | 71 | 3828 | 9 | 9 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 98.2998 | 97.1631 | 99.4633 | 61.2613 | 548 | 16 | 556 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 91.0540 | 83.9806 | 99.4286 | 47.7612 | 173 | 33 | 174 | 1 | 1 | 100.0000 | |
| mlin-fermikit | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 82.5569 | 70.6298 | 99.3305 | 60.9945 | 10889 | 4528 | 10979 | 74 | 74 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 90.9072 | 83.7989 | 99.3333 | 37.2385 | 150 | 29 | 149 | 1 | 1 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2886 | 97.4684 | 99.1228 | 83.5498 | 308 | 8 | 339 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.0806 | 98.7622 | 99.4012 | 57.1167 | 1117 | 14 | 1162 | 7 | 7 | 100.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | homalt | 99.4431 | 99.3641 | 99.5223 | 90.1798 | 625 | 4 | 625 | 3 | 3 | 100.0000 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 98.1641 | 97.2350 | 99.1111 | 53.7037 | 211 | 6 | 223 | 2 | 2 | 100.0000 | |