PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4251-4300 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | D1_5 | segdup | homalt | 99.5816 | 99.4429 | 99.7207 | 94.5193 | 357 | 2 | 357 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | HG002complexvar | homalt | 99.0619 | 99.3157 | 98.8095 | 62.8201 | 1161 | 8 | 1162 | 14 | 14 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 96.1165 | 94.7368 | 97.5369 | 77.2676 | 198 | 11 | 198 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.8254 | 96.0630 | 97.6000 | 79.5417 | 122 | 5 | 122 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.8919 | 87.1795 | 97.1429 | 60.6742 | 34 | 5 | 34 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 97.6744 | 97.6744 | 97.6744 | 77.7202 | 42 | 1 | 42 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3019 | 98.7847 | 99.8246 | 69.4206 | 569 | 7 | 569 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 94.4781 | 92.7273 | 96.2963 | 63.5135 | 51 | 4 | 52 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4851 | 99.1786 | 99.7934 | 67.2973 | 483 | 4 | 483 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 93.7973 | 90.9091 | 96.8750 | 63.2184 | 30 | 3 | 31 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 84.9521 | 75.2294 | 97.5610 | 27.3958 | 656 | 216 | 680 | 17 | 17 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.4357 | 99.2481 | 99.6241 | 82.5115 | 264 | 2 | 265 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.3328 | 97.2973 | 97.3684 | 61.6162 | 36 | 1 | 37 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.2314 | 98.7059 | 99.7625 | 51.4137 | 839 | 11 | 840 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.3908 | 99.0173 | 99.7672 | 36.4175 | 1713 | 17 | 1714 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.1404 | 98.4353 | 99.8557 | 46.9778 | 692 | 11 | 692 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3228 | 99.3228 | 99.3228 | 34.5643 | 440 | 3 | 440 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 73.3333 | 63 | 5 | 63 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 74.5020 | 63 | 5 | 63 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 74.4361 | 67 | 6 | 67 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | segdup | * | 96.0000 | 94.2408 | 97.8261 | 94.5287 | 180 | 11 | 180 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D6_15 | segdup | homalt | 96.1538 | 100.0000 | 92.5926 | 92.2747 | 50 | 0 | 50 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | * | hetalt | 94.3306 | 90.2765 | 98.7661 | 58.9229 | 1894 | 204 | 1921 | 24 | 24 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | * | 97.0837 | 95.3400 | 98.8924 | 68.3287 | 1248 | 61 | 1250 | 14 | 14 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | het | 97.3776 | 95.0376 | 99.8358 | 65.4566 | 632 | 33 | 608 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | hetalt | 95.7378 | 92.8358 | 98.8270 | 70.0351 | 311 | 24 | 337 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002complexvar | homalt | 97.9133 | 98.7055 | 97.1338 | 71.1927 | 305 | 4 | 305 | 9 | 9 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | het | 80.8415 | 91.4894 | 72.4138 | 94.0574 | 43 | 4 | 21 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | HG002compoundhet | hetalt | 94.3857 | 90.2532 | 98.9147 | 46.6501 | 1889 | 204 | 1914 | 21 | 21 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 94.7213 | 91.5952 | 98.0684 | 63.9529 | 534 | 49 | 660 | 13 | 13 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 95.5476 | 92.4127 | 98.9026 | 69.5997 | 609 | 50 | 721 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.6330 | 82.7586 | 97.7528 | 84.0215 | 72 | 15 | 87 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 93.7500 | 1 | 0 | 2 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 90.8989 | 84.9624 | 97.7273 | 86.2069 | 113 | 20 | 129 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 92.7463 | 87.9765 | 98.0630 | 55.8289 | 300 | 41 | 405 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.2260 | 85.8491 | 97.3214 | 84.7411 | 91 | 15 | 109 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 93.0561 | 88.8112 | 97.7273 | 51.9782 | 254 | 32 | 344 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 93.3603 | 88.9474 | 98.2340 | 60.9483 | 338 | 42 | 445 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 95.5476 | 92.4127 | 98.9026 | 69.5997 | 609 | 50 | 721 | 8 | 8 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 92.0804 | 87.4552 | 97.2222 | 61.8644 | 244 | 35 | 350 | 10 | 10 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.6974 | 93.6170 | 97.8723 | 81.0484 | 44 | 3 | 46 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 96.5475 | 96.4286 | 96.6667 | 60.5263 | 27 | 1 | 29 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 96.6553 | 94.0476 | 99.4118 | 79.9292 | 158 | 10 | 169 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.2984 | 97.1429 | 99.4819 | 65.9011 | 170 | 5 | 192 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | homalt | 92.6829 | 90.4762 | 95.0000 | 95.0249 | 19 | 2 | 19 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | * | 95.6522 | 93.6170 | 97.7778 | 96.4143 | 44 | 3 | 44 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | segdup | hetalt | 75.0000 | 75.0000 | 75.0000 | 97.4522 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 91.0337 | 84.5238 | 98.6301 | 61.1702 | 71 | 13 | 72 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.2630 | 99.0000 | 97.5369 | 60.9615 | 198 | 2 | 198 | 5 | 5 | 100.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3303 | 93.7500 | 99.0566 | 76.1261 | 105 | 7 | 105 | 1 | 1 | 100.0000 | |