PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4201-4250 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | I1_5 | map_l250_m0_e0 | homalt | 66.9856 | 77.7778 | 58.8235 | 97.3725 | 7 | 2 | 10 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I1_5 | tech_badpromoters | het | 37.5000 | 25.0000 | 75.0000 | 69.2308 | 2 | 6 | 3 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | * | 25.8065 | 15.3846 | 80.0000 | 37.5000 | 2 | 11 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 28.5714 | 1 | 0 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l100_m0_e0 | homalt | 72.7273 | 75.0000 | 70.5882 | 81.1111 | 9 | 3 | 12 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | homalt | 78.9474 | 83.3333 | 75.0000 | 87.8788 | 5 | 1 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | tech_badpromoters | * | 57.1429 | 46.1538 | 75.0000 | 50.0000 | 6 | 7 | 6 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I6_15 | tech_badpromoters | homalt | 75.0000 | 100.0000 | 60.0000 | 54.5455 | 3 | 0 | 3 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | * | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | * | decoy | het | 0.0000 | 0.0000 | 99.9995 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 50.0000 | 50.0000 | 50.0000 | 94.1176 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | * | tech_badpromoters | * | 89.4635 | 84.0764 | 95.5882 | 39.8230 | 132 | 25 | 130 | 6 | 6 | 100.0000 | |
| anovak-vg | SNP | * | tech_badpromoters | het | 84.5070 | 77.9221 | 92.3077 | 45.8333 | 60 | 17 | 60 | 5 | 5 | 100.0000 | |
| anovak-vg | SNP | * | tech_badpromoters | homalt | 94.1001 | 90.0000 | 98.5915 | 33.0189 | 72 | 8 | 70 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | decoy | * | 0.0000 | 0.0000 | 50.0000 | 99.9986 | 0 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | decoy | het | 0.0000 | 0.0000 | 99.9992 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.2381 | 5 | 1 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 97.9888 | 97.4071 | 98.5775 | 24.3272 | 1390 | 37 | 1386 | 20 | 20 | 100.0000 | |
| anovak-vg | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 50.0000 | 50.0000 | 50.0000 | 90.4762 | 1 | 1 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | ti | tech_badpromoters | * | 89.2841 | 83.5294 | 95.8904 | 38.1356 | 71 | 14 | 70 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | ti | tech_badpromoters | het | 83.5443 | 75.0000 | 94.2857 | 45.3125 | 33 | 11 | 33 | 2 | 2 | 100.0000 | |
| anovak-vg | SNP | ti | tech_badpromoters | homalt | 94.9679 | 92.6829 | 97.3684 | 29.6296 | 38 | 3 | 37 | 1 | 1 | 100.0000 | |
| anovak-vg | SNP | tv | decoy | * | 0.0000 | 0.0000 | 99.9988 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | tv | decoy | het | 0.0000 | 0.0000 | 99.9986 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | SNP | tv | tech_badpromoters | * | 89.6729 | 84.7222 | 95.2381 | 42.7273 | 61 | 11 | 60 | 3 | 3 | 100.0000 | |
| anovak-vg | SNP | tv | tech_badpromoters | het | 85.7143 | 81.8182 | 90.0000 | 48.2759 | 27 | 6 | 27 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 38.4824 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9775 | 89.0167 | 99.5238 | 40.0705 | 3404 | 420 | 3553 | 17 | 17 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.7788 | 99.3179 | 98.2456 | 73.2684 | 728 | 5 | 728 | 13 | 13 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 98.0429 | 96.5665 | 99.5652 | 76.2642 | 225 | 8 | 229 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 98.0901 | 96.9697 | 99.2366 | 79.9080 | 128 | 4 | 130 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 93.6552 | 88.4686 | 99.4878 | 37.7483 | 2409 | 314 | 2525 | 13 | 13 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 87.4680 | 77.9553 | 99.6251 | 31.2943 | 976 | 276 | 1063 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.2046 | 97.0093 | 99.4297 | 73.5811 | 519 | 16 | 523 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.8721 | 97.9866 | 99.7738 | 42.6347 | 2628 | 54 | 2646 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 97.5860 | 95.8996 | 99.3328 | 33.9394 | 1146 | 49 | 1191 | 8 | 8 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6744 | 99.4583 | 99.8915 | 29.8859 | 918 | 5 | 921 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9071 | 100.0000 | 99.8145 | 47.5553 | 2152 | 0 | 2152 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 97.9167 | 100.0000 | 95.9184 | 54.2056 | 47 | 0 | 47 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 88.0126 | 79.7101 | 98.2456 | 58.3942 | 55 | 14 | 56 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.8342 | 98.4496 | 99.2218 | 63.6492 | 254 | 4 | 255 | 2 | 2 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 95.8333 | 93.2432 | 98.5714 | 82.3678 | 69 | 5 | 69 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 95.8904 | 94.5946 | 97.2222 | 88.3871 | 35 | 2 | 35 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 80.2738 | 67.8208 | 98.3287 | 28.7698 | 333 | 158 | 353 | 6 | 6 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.5882 | 92.9577 | 56.8966 | 51.0549 | 66 | 5 | 66 | 50 | 50 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 97.9056 | 96.5937 | 99.2537 | 71.5700 | 397 | 14 | 399 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.8131 | 99.6954 | 99.9311 | 54.3062 | 10147 | 31 | 10148 | 7 | 7 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.6034 | 99.3181 | 99.8903 | 51.3153 | 3641 | 25 | 3642 | 4 | 4 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 99.6750 | 99.5671 | 99.7831 | 30.2572 | 460 | 2 | 460 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 61.1111 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |