PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42051-42100 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 94.4444 | 97.0779 | 0 | 0 | 17 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 99.1453 | 95.9585 | 0 | 0 | 116 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 97.8723 | 95.4721 | 0 | 0 | 46 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.1538 | 97.0115 | 0 | 0 | 25 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 98.8024 | 95.5691 | 0 | 0 | 165 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 96.6667 | 95.6927 | 0 | 0 | 58 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 97.7778 | 100.0000 | 95.6522 | 99.1301 | 1 | 0 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 94.7368 | 100.0000 | 90.0000 | 99.2424 | 1 | 0 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 86.6667 | 93.7931 | 0 | 1 | 78 | 12 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 75.5556 | 93.5065 | 0 | 1 | 34 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 95.4545 | 93.2308 | 0 | 0 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | map_siren | het | 0.0000 | 0.0000 | 90.9091 | 96.6206 | 0 | 0 | 20 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | tech_badpromoters | * | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C1_5 | tech_badpromoters | het | 0.0000 | 0.0000 | 0.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | * | het | 98.3240 | 100.0000 | 96.7033 | 93.1061 | 7 | 0 | 176 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002complexvar | het | 99.1354 | 100.0000 | 98.2857 | 78.8392 | 4 | 0 | 172 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 95.0000 | 88.3041 | 0 | 0 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.7500 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 96.1538 | 94.3437 | 0 | 0 | 75 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 93.3333 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 97.5610 | 95.6337 | 0 | 0 | 40 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 96.1538 | 94.3437 | 0 | 0 | 75 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 96.0938 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 0.0000 | 75.0000 | 94.8052 | 0 | 0 | 3 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | segdup | * | 0.0000 | 0.0000 | 85.7143 | 97.5779 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C6_15 | segdup | het | 0.0000 | 0.0000 | 80.0000 | 96.4539 | 0 | 0 | 4 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.6898 | 94.0299 | 97.4093 | 80.1031 | 189 | 12 | 188 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2067 | 98.6486 | 99.7712 | 68.9410 | 438 | 6 | 436 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.9734 | 96.5087 | 99.4832 | 66.2598 | 387 | 14 | 385 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 88.3843 | 82.1429 | 95.6522 | 87.8307 | 23 | 5 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 88.7246 | 84.2105 | 93.7500 | 87.4016 | 16 | 3 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 91.6667 | 91.6667 | 91.6667 | 89.5652 | 11 | 1 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 88.4615 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.2655 | 92.5926 | 96.0000 | 88.3721 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 94.8682 | 95.0000 | 94.7368 | 87.3333 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.2655 | 92.5926 | 96.0000 | 89.7959 | 25 | 2 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 94.8682 | 95.0000 | 94.7368 | 89.2045 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 92.5212 | 89.2857 | 96.0000 | 89.9194 | 25 | 3 | 24 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 94.8682 | 95.0000 | 94.7368 | 89.3258 | 19 | 1 | 18 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 90.5882 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 86.4407 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 90.2597 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 92.8571 | 92.8571 | 92.8571 | 87.0370 | 13 | 1 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.1176 | 94.1176 | 94.1176 | 90.5556 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 93.7500 | 93.7500 | 93.7500 | 87.8788 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.4286 | 88.8889 | 94.1176 | 90.7609 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 93.7500 | 93.7500 | 93.7500 | 88.1481 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | D16_PLUS | map_siren | * | 93.7214 | 88.8112 | 99.2063 | 83.9490 | 127 | 16 | 125 | 1 | 0 | 0.0000 | |