PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
42001-42050 / 86044 show all | |||||||||||||||
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4652 | 99.1471 | 99.7854 | 85.6439 | 465 | 4 | 465 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7995 | 99.6662 | 99.9331 | 80.2093 | 1493 | 5 | 1493 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.5522 | 41 | 1 | 41 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.3495 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |
| jli-custom | SNP | tv | segdup | het | 99.3872 | 99.6974 | 99.0789 | 90.9422 | 5271 | 16 | 5271 | 49 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | func_cds | * | 97.9088 | 99.5506 | 96.3203 | 53.9841 | 443 | 2 | 445 | 17 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | func_cds | het | 95.9801 | 99.5327 | 92.6724 | 62.8205 | 213 | 1 | 215 | 17 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.7133 | 90.3226 | 97.3684 | 99.9248 | 112 | 12 | 111 | 3 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.4483 | 86.2069 | 97.3684 | 99.9056 | 75 | 12 | 74 | 2 | 0 | 0.0000 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9618 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | * | 95.9459 | 98.6111 | 93.4211 | 57.0621 | 71 | 1 | 71 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | SNP | tv | tech_badpromoters | het | 92.9577 | 100.0000 | 86.8421 | 59.1398 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | * | 99.3248 | 99.1011 | 99.5495 | 36.5714 | 441 | 4 | 442 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | func_cds | het | 99.0654 | 99.0654 | 99.0654 | 38.1503 | 212 | 2 | 212 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 92.4324 | 90.0000 | 95.0000 | 99.2424 | 18 | 2 | 19 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 96.2963 | 100.0000 | 92.8571 | 99.1495 | 12 | 0 | 13 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 91.0816 | 88.2353 | 94.1176 | 99.3441 | 15 | 2 | 16 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 95.6522 | 100.0000 | 91.6667 | 99.2551 | 10 | 0 | 11 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m0_e0 | het | 96.5544 | 94.7111 | 98.4709 | 76.6706 | 967 | 54 | 966 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m0_e0 | het | 95.8851 | 93.1857 | 98.7455 | 80.3036 | 547 | 40 | 551 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m1_e0 | het | 97.3392 | 95.8052 | 98.9231 | 79.2399 | 1279 | 56 | 1286 | 14 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e0 | het | 97.4100 | 95.9022 | 98.9660 | 80.9349 | 1334 | 57 | 1340 | 14 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l125_m2_e1 | het | 97.3719 | 95.9517 | 98.8347 | 81.0855 | 1351 | 57 | 1357 | 16 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | het | 95.4873 | 92.9619 | 98.1538 | 84.2843 | 317 | 24 | 319 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m1_e0 | het | 96.9589 | 95.0877 | 98.9051 | 82.3832 | 813 | 42 | 813 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e0 | het | 97.0759 | 95.2539 | 98.9691 | 83.7521 | 863 | 43 | 864 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m2_e1 | het | 97.0778 | 95.2381 | 98.9899 | 83.8059 | 880 | 44 | 882 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | * | 93.3679 | 89.7436 | 97.2973 | 95.4037 | 70 | 8 | 72 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m0_e0 | het | 92.1945 | 88.6792 | 96.0000 | 94.3883 | 47 | 6 | 48 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | * | 95.7733 | 92.7869 | 98.9583 | 92.4330 | 283 | 22 | 285 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m1_e0 | het | 94.2599 | 90.5263 | 98.3146 | 91.6275 | 172 | 18 | 175 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | * | 96.1163 | 93.3535 | 99.0476 | 93.0417 | 309 | 22 | 312 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e0 | het | 94.8292 | 91.4286 | 98.4925 | 92.1437 | 192 | 18 | 196 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | * | 96.1403 | 93.3934 | 99.0536 | 93.2003 | 311 | 22 | 314 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | map_l250_m2_e1 | het | 94.8545 | 91.4692 | 98.5000 | 92.3518 | 193 | 18 | 197 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | * | 98.0392 | 98.6842 | 97.4026 | 50.0000 | 75 | 1 | 75 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | * | tech_badpromoters | het | 97.5000 | 100.0000 | 95.1220 | 44.5946 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 96.8254 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 96.7742 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 98.0769 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.1818 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ltrigg-rtg2 | INDEL | C1_5 | HG002complexvar | homalt | 0.0000 | 0.0000 | 99.6403 | 90.3972 | 0 | 0 | 277 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 90.0000 | 94.5055 | 0 | 0 | 9 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 98.5507 | 98.0274 | 0 | 0 | 68 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 85.7143 | 95.8580 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 66.6667 | 96.6667 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 92.3077 | 94.9020 | 0 | 0 | 12 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 75.0000 | 91.3043 | 0 | 0 | 3 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.4615 | 95.8586 | 0 | 0 | 128 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.0769 | 95.2899 | 0 | 0 | 51 | 1 | 0 | 0.0000 | |