PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41701-41750 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 50.0000 | 0.0000 | 93.3333 | 1 | 1 | 0 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | * | 92.0000 | 88.4615 | 95.8333 | 93.6000 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8042 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | * | 92.0000 | 88.4615 | 95.8333 | 93.6675 | 23 | 3 | 23 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 95.8333 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | * | 89.6552 | 86.6667 | 92.8571 | 94.6970 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 96.1905 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | * | 89.6552 | 86.6667 | 92.8571 | 94.7170 | 13 | 2 | 13 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 96.1905 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | map_siren | het | 94.8454 | 93.8776 | 95.8333 | 88.5442 | 46 | 3 | 46 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 94.2238 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 93.2432 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 32.5926 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| raldana-dualsentieon | INDEL | I1_5 | func_cds | het | 97.5068 | 98.3051 | 96.7213 | 38.3838 | 58 | 1 | 59 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.2825 | 96.1942 | 98.3957 | 66.2911 | 733 | 29 | 736 | 12 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.6442 | 96.0920 | 97.2028 | 69.3571 | 418 | 17 | 417 | 12 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m0_e0 | het | 96.3290 | 93.2318 | 99.6390 | 71.5167 | 551 | 40 | 552 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m1_e0 | het | 97.0745 | 94.7064 | 99.5641 | 73.0054 | 1145 | 64 | 1142 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e0 | het | 97.1444 | 94.8248 | 99.5802 | 74.4091 | 1191 | 65 | 1186 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l100_m2_e1 | het | 97.1325 | 94.8738 | 99.5012 | 74.5666 | 1203 | 65 | 1197 | 6 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m0_e0 | het | 95.7836 | 92.1739 | 99.6875 | 74.7036 | 318 | 27 | 319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m1_e0 | het | 96.5285 | 93.8017 | 99.4186 | 74.9818 | 681 | 45 | 684 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e0 | het | 96.7059 | 94.1099 | 99.4490 | 76.6409 | 719 | 45 | 722 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l125_m2_e1 | het | 96.6680 | 94.1558 | 99.3179 | 76.7302 | 725 | 45 | 728 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m0_e0 | het | 93.9975 | 89.1089 | 99.4536 | 79.7790 | 180 | 22 | 182 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m1_e0 | het | 95.8130 | 92.5311 | 99.3363 | 77.5012 | 446 | 36 | 449 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e0 | het | 96.0834 | 92.9961 | 99.3827 | 79.1327 | 478 | 36 | 483 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | map_l150_m2_e1 | het | 96.0425 | 92.9119 | 99.3915 | 79.1102 | 485 | 37 | 490 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | * | 99.1335 | 98.5494 | 99.7245 | 92.9129 | 1087 | 16 | 1086 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D1_5 | segdup | het | 98.6884 | 97.8324 | 99.5595 | 91.9044 | 677 | 15 | 678 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | HG002complexvar | homalt | 99.0057 | 98.1180 | 99.9096 | 52.1005 | 1147 | 22 | 1105 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.0769 | 97.6077 | 98.5507 | 70.1299 | 204 | 5 | 204 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.0299 | 98.4252 | 97.6378 | 70.6019 | 125 | 2 | 124 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.3000 | 98.9583 | 99.6441 | 61.5332 | 570 | 6 | 560 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.6858 | 98.0645 | 99.3151 | 81.1856 | 152 | 3 | 145 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.5867 | 99.2941 | 99.8810 | 43.2816 | 844 | 6 | 839 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.4293 | 97.9167 | 98.9474 | 40.2516 | 188 | 4 | 188 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | het | 94.9137 | 95.0000 | 94.8276 | 83.1884 | 57 | 3 | 55 | 3 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m0_e0 | homalt | 95.7427 | 95.8333 | 95.6522 | 86.4706 | 23 | 1 | 22 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | het | 96.8254 | 96.8254 | 96.8254 | 81.9742 | 122 | 4 | 122 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m1_e0 | homalt | 96.7994 | 95.3125 | 98.3333 | 81.0726 | 61 | 3 | 59 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9348 | 96.9466 | 96.9231 | 82.5034 | 127 | 4 | 126 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e0 | homalt | 96.8498 | 95.3846 | 98.3607 | 81.8452 | 62 | 3 | 60 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0148 | 97.0370 | 96.9925 | 82.5459 | 131 | 4 | 129 | 4 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_l100_m2_e1 | homalt | 96.9460 | 95.5224 | 98.4127 | 81.9484 | 64 | 3 | 62 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | het | 97.8430 | 97.5000 | 98.1884 | 80.0145 | 273 | 7 | 271 | 5 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | homalt | 97.6500 | 96.1538 | 99.1935 | 78.0142 | 125 | 5 | 123 | 1 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | segdup | * | 96.5000 | 94.2408 | 98.8701 | 91.4327 | 180 | 11 | 175 | 2 | 0 | 0.0000 | |
| ltrigg-rtg1 | INDEL | D6_15 | segdup | het | 97.1910 | 96.7391 | 97.6471 | 92.1803 | 89 | 3 | 83 | 2 | 0 | 0.0000 | |