PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
41151-41200 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | het | 98.4833 | 97.9879 | 98.9837 | 87.1170 | 487 | 10 | 487 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | het | 98.5163 | 98.0315 | 99.0060 | 87.2108 | 498 | 10 | 498 | 5 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | het | 97.6077 | 96.2264 | 99.0291 | 92.6795 | 102 | 4 | 102 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | het | 98.3165 | 97.6589 | 98.9831 | 89.3000 | 292 | 7 | 292 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | het | 98.3713 | 97.7346 | 99.0164 | 90.2306 | 302 | 7 | 302 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | het | 98.4127 | 97.7918 | 99.0415 | 90.2735 | 310 | 7 | 310 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 97.9592 | 100.0000 | 96.0000 | 97.8485 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.9747 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | het | 97.4790 | 96.6667 | 98.3051 | 96.2753 | 58 | 2 | 58 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | het | 97.7099 | 96.9697 | 98.4615 | 96.4364 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | het | 97.7099 | 96.9697 | 98.4615 | 96.5608 | 64 | 2 | 64 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 92.1739 | 86.8852 | 98.1481 | 59.7015 | 53 | 8 | 53 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 96.3927 | 94.1176 | 98.7805 | 57.2917 | 80 | 5 | 81 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 97.1059 | 96.1538 | 98.0769 | 54.3860 | 50 | 2 | 51 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 93.8462 | 89.7059 | 98.3871 | 69.0000 | 61 | 7 | 61 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | * | 93.7500 | 90.9091 | 96.7742 | 90.4321 | 30 | 3 | 30 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m0_e0 | het | 94.1176 | 94.1176 | 94.1176 | 91.3706 | 16 | 1 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l100_m2_e1 | hetalt | 93.0233 | 90.9091 | 95.2381 | 85.5172 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m0_e0 | * | 93.3333 | 93.3333 | 93.3333 | 93.6709 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m0_e0 | het | 88.8889 | 88.8889 | 88.8889 | 94.0789 | 8 | 1 | 8 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | * | 95.1456 | 92.4528 | 98.0000 | 89.3617 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m1_e0 | het | 93.1034 | 90.0000 | 96.4286 | 89.8917 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | * | 95.1456 | 92.4528 | 98.0000 | 90.6542 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e0 | het | 93.1034 | 90.0000 | 96.4286 | 90.8497 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e1 | * | 95.1456 | 92.4528 | 98.0000 | 90.9091 | 49 | 4 | 49 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l125_m2_e1 | het | 93.1034 | 90.0000 | 96.4286 | 91.0256 | 27 | 3 | 27 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | * | 87.5000 | 87.5000 | 87.5000 | 95.7219 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 96.8254 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 93.8172 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m1_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.3966 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 94.5755 | 22 | 3 | 22 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e0 | het | 85.7143 | 80.0000 | 92.3077 | 94.8413 | 12 | 3 | 12 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 94.3439 | 24 | 3 | 24 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l150_m2_e1 | het | 86.6667 | 81.2500 | 92.8571 | 94.6360 | 13 | 3 | 13 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 98.1132 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.7013 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | * | 85.7143 | 85.7143 | 85.7143 | 96.9298 | 6 | 1 | 6 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.2603 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | * | 87.5000 | 87.5000 | 87.5000 | 96.8127 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 96.8944 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e1 | * | 87.5000 | 87.5000 | 87.5000 | 96.9349 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.0060 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | * | 99.9367 | 99.9614 | 99.9119 | 23.5700 | 18143 | 7 | 18143 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | func_cds | het | 99.9060 | 99.9552 | 99.8568 | 24.2730 | 11156 | 5 | 11156 | 16 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4571 | 99.1580 | 99.7580 | 57.7755 | 2473 | 21 | 2473 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | * | tech_badpromoters | het | 97.4359 | 98.7013 | 96.2025 | 50.0000 | 76 | 1 | 76 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | func_cds | * | 99.9384 | 99.9565 | 99.9202 | 22.0527 | 13781 | 6 | 13781 | 11 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | func_cds | het | 99.9118 | 99.9530 | 99.8708 | 22.7256 | 8500 | 4 | 8500 | 11 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.5243 | 99.3038 | 99.7457 | 47.7582 | 1569 | 11 | 1569 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7564 | 99.5904 | 99.9230 | 28.4060 | 3890 | 16 | 3891 | 3 | 0 | 0.0000 | |