PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
4051-4100 / 86044 show all | |||||||||||||||
| astatham-gatk | INDEL | I6_15 | func_cds | homalt | 96.7742 | 100.0000 | 93.7500 | 40.7407 | 15 | 0 | 15 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 93.9097 | 88.6792 | 99.7959 | 48.3122 | 470 | 60 | 489 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 92.1875 | 100.0000 | 85.5072 | 75.7042 | 59 | 0 | 59 | 10 | 10 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 97.6909 | 95.5769 | 99.9005 | 44.3501 | 2982 | 138 | 3011 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 97.2350 | 94.7249 | 99.8818 | 43.0518 | 3340 | 186 | 3381 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.0725 | 92.1348 | 98.2036 | 72.2591 | 164 | 14 | 164 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 96.0000 | 100.0000 | 92.3077 | 68.2927 | 36 | 0 | 36 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.4338 | 99.1525 | 99.7167 | 70.1606 | 351 | 3 | 352 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.4595 | 100.0000 | 98.9247 | 69.9029 | 92 | 0 | 92 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1917 | 89.2562 | 99.7050 | 47.1139 | 324 | 39 | 338 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 79.0210 | 24 | 0 | 24 | 6 | 6 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.8787 | 94.0922 | 99.8354 | 35.2518 | 2389 | 150 | 2426 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 97.3082 | 94.8858 | 99.8574 | 33.4809 | 2078 | 112 | 2101 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.8256 | 93.9864 | 99.8416 | 36.8816 | 2485 | 159 | 2522 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 97.2350 | 94.7249 | 99.8818 | 43.0518 | 3340 | 186 | 3381 | 4 | 4 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 97.0710 | 94.4664 | 99.8233 | 40.6709 | 1673 | 98 | 1695 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 82.5864 | 71.0843 | 98.5294 | 30.6122 | 59 | 24 | 67 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.3103 | 100.0000 | 98.6301 | 68.1223 | 216 | 0 | 216 | 3 | 3 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 96.6851 | 94.0860 | 99.4318 | 71.0526 | 175 | 11 | 175 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 0.0000 | 0.0000 | 95.8333 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | * | 92.0635 | 87.8788 | 96.6667 | 92.5558 | 29 | 4 | 29 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l100_m0_e0 | het | 90.9091 | 88.2353 | 93.7500 | 93.5223 | 15 | 2 | 15 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | * | 85.7143 | 80.0000 | 92.3077 | 95.6667 | 12 | 3 | 12 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l125_m0_e0 | het | 82.3529 | 77.7778 | 87.5000 | 95.8115 | 7 | 2 | 7 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.1660 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m0_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.5309 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.3252 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m1_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.4248 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | * | 91.6667 | 88.0000 | 95.6522 | 95.8106 | 22 | 3 | 22 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e0 | het | 89.6552 | 86.6667 | 92.8571 | 95.8333 | 13 | 2 | 13 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | * | 92.3077 | 88.8889 | 96.0000 | 95.6140 | 24 | 3 | 24 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l150_m2_e1 | het | 90.3226 | 87.5000 | 93.3333 | 95.6647 | 14 | 2 | 14 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.1870 | 0 | 1 | 0 | 1 | 1 | 100.0000 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.7500 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| astatham-gatk | INDEL | I6_15 | map_l250_m1_e0 | * | 76.9231 | 71.4286 | 83.3333 | 97.9381 | 5 | 2 | 5 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m1_e0 | het | 75.0000 | 75.0000 | 75.0000 | 97.8610 | 3 | 1 | 3 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e0 | * | 80.0000 | 75.0000 | 85.7143 | 97.8593 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e0 | het | 80.0000 | 80.0000 | 80.0000 | 97.6636 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | * | 80.0000 | 75.0000 | 85.7143 | 97.9532 | 6 | 2 | 6 | 1 | 1 | 100.0000 | |
| astatham-gatk | INDEL | I6_15 | map_l250_m2_e1 | het | 80.0000 | 80.0000 | 80.0000 | 97.7376 | 4 | 1 | 4 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 99.6558 | 99.3707 | 99.9425 | 60.7763 | 1737 | 11 | 1737 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.8587 | 99.7475 | 99.9702 | 56.3085 | 20148 | 51 | 20148 | 6 | 6 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.6662 | 99.3697 | 99.9644 | 66.5145 | 16868 | 107 | 16868 | 6 | 6 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8445 | 99.7514 | 99.9377 | 43.3110 | 1605 | 4 | 1605 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.0067 | 98.2249 | 99.8012 | 86.1050 | 498 | 9 | 502 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.0342 | 98.2942 | 99.7854 | 85.3275 | 461 | 8 | 465 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.5646 | 99.1989 | 99.9329 | 79.3662 | 1486 | 12 | 1490 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.9195 | 97.9163 | 99.9436 | 71.6321 | 5310 | 113 | 5314 | 3 | 3 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.4598 | 98.9813 | 99.9429 | 61.0494 | 1749 | 18 | 1751 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.2749 | 98.6108 | 99.9480 | 59.6368 | 3833 | 54 | 3843 | 2 | 2 | 100.0000 | |