PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40751-40800 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.9164 | 96.9262 | 98.9270 | 73.8349 | 473 | 15 | 461 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 89.1292 | 82.8571 | 96.4286 | 83.8150 | 29 | 6 | 27 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2797 | 99.2823 | 99.2771 | 46.2435 | 415 | 3 | 412 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3223 | 99.1803 | 97.4790 | 53.1496 | 121 | 1 | 116 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | INDEL | I6_15 | map_siren | het | 96.3922 | 93.7063 | 99.2366 | 78.1667 | 134 | 9 | 130 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.9507 | 98.3108 | 99.5989 | 82.2763 | 2328 | 40 | 2235 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.0937 | 98.8111 | 99.3780 | 84.1286 | 1496 | 18 | 1438 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l125_m0_e0 | het | 97.5444 | 95.3569 | 99.8346 | 54.8630 | 12076 | 588 | 12074 | 20 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l150_m0_e0 | het | 96.8156 | 94.0050 | 99.7994 | 59.7632 | 7464 | 476 | 7461 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m0_e0 | het | 92.7987 | 86.8526 | 99.6189 | 78.5270 | 1308 | 198 | 1307 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | tech_badpromoters | * | 98.7421 | 100.0000 | 97.5155 | 54.2614 | 157 | 0 | 157 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | * | tech_badpromoters | het | 97.4684 | 100.0000 | 95.0617 | 59.0909 | 77 | 0 | 77 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 98.2421 | 99.1889 | 97.3132 | 58.3402 | 2935 | 24 | 2970 | 82 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3212 | 98.9623 | 95.7336 | 62.0458 | 1812 | 19 | 1840 | 82 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.2263 | 99.6260 | 98.8298 | 49.0498 | 3996 | 15 | 4054 | 48 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.9220 | 99.6855 | 98.1700 | 51.8185 | 2536 | 8 | 2575 | 48 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.5944 | 99.7950 | 99.3947 | 49.7872 | 2434 | 5 | 2463 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4692 | 99.8734 | 99.0683 | 51.6226 | 1578 | 2 | 1595 | 15 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.5254 | 97.5543 | 99.5160 | 81.1874 | 1077 | 27 | 1028 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 98.8005 | 98.3333 | 99.2722 | 82.8678 | 708 | 12 | 682 | 5 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 67.5768 | 56.2500 | 84.6154 | 95.9248 | 9 | 7 | 11 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 60.0000 | 50.0000 | 75.0000 | 96.8627 | 5 | 5 | 6 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7486 | 99.5235 | 99.9748 | 31.2218 | 3968 | 19 | 3962 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6572 | 99.5964 | 99.7181 | 27.1206 | 2468 | 10 | 2476 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l125_m0_e0 | het | 97.6557 | 95.5343 | 99.8735 | 55.0552 | 7894 | 369 | 7894 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | het | 96.9091 | 94.1142 | 99.8751 | 60.5146 | 4797 | 300 | 4797 | 6 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | map_l250_m0_e0 | het | 92.9143 | 87.0450 | 99.6324 | 79.6863 | 813 | 121 | 813 | 3 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | * | 98.8372 | 100.0000 | 97.7011 | 47.9042 | 85 | 0 | 85 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | het | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 44 | 0 | 44 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | func_cds | * | 99.5213 | 99.8856 | 99.1597 | 26.7631 | 4366 | 5 | 4366 | 37 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | func_cds | het | 99.2144 | 99.8118 | 98.6240 | 27.1866 | 2652 | 5 | 2652 | 37 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.5837 | 99.2071 | 99.9631 | 70.9548 | 5380 | 43 | 5419 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 90.8215 | 86.6667 | 95.3947 | 86.7596 | 143 | 22 | 145 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 90.9497 | 87.9032 | 94.2149 | 86.1556 | 109 | 15 | 114 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 98.5727 | 97.6793 | 99.4826 | 83.5502 | 1389 | 33 | 1346 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 98.5540 | 97.9189 | 99.1972 | 85.2279 | 894 | 19 | 865 | 7 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.3201 | 98.9723 | 99.6702 | 83.1011 | 1252 | 13 | 1209 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.3589 | 99.2443 | 99.4737 | 85.1185 | 788 | 6 | 756 | 4 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.5837 | 99.2071 | 99.9631 | 70.9548 | 5380 | 43 | 5419 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 91.0345 | 85.7143 | 97.0588 | 87.3606 | 36 | 6 | 33 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 91.0330 | 86.1111 | 96.5517 | 86.1244 | 31 | 5 | 28 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | * | 98.1288 | 96.4862 | 99.8283 | 59.5773 | 6398 | 233 | 6396 | 11 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | het | 97.3350 | 95.0239 | 99.7613 | 54.4961 | 4182 | 219 | 4180 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l125_m0_e0 | homalt | 99.7066 | 99.4597 | 99.9548 | 66.5911 | 2209 | 12 | 2209 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | * | 97.6140 | 95.5678 | 99.7497 | 64.5964 | 3989 | 185 | 3986 | 10 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | het | 96.6478 | 93.8094 | 99.6633 | 58.3385 | 2667 | 176 | 2664 | 9 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l150_m0_e0 | homalt | 99.6224 | 99.3223 | 99.9242 | 72.7891 | 1319 | 9 | 1319 | 1 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | * | 94.4251 | 89.6732 | 99.7089 | 83.7895 | 686 | 79 | 685 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m0_e0 | het | 92.6096 | 86.5385 | 99.5968 | 76.3020 | 495 | 77 | 494 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | tv | map_l250_m1_e0 | * | 96.5840 | 93.4643 | 99.9191 | 77.8524 | 2474 | 173 | 2471 | 2 | 0 | 0.0000 | |