PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40651-40700 / 86044 show all | |||||||||||||||
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.1067 | 98.2534 | 99.9750 | 43.4659 | 3994 | 71 | 3992 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.9878 | 96.2873 | 99.7494 | 25.8824 | 2386 | 92 | 2388 | 6 | 0 | 0.0000 | |
| mlin-fermikit | SNP | ti | segdup | het | 97.7090 | 96.7914 | 98.6442 | 84.9489 | 11644 | 386 | 11641 | 160 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | func_cds | het | 99.1679 | 98.6827 | 99.6579 | 21.9982 | 2622 | 35 | 2622 | 9 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 98.8403 | 97.7490 | 99.9563 | 59.9965 | 6861 | 158 | 6856 | 3 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 74.6313 | 61.1111 | 95.8333 | 91.7241 | 22 | 14 | 23 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0340 | 96.7727 | 99.3285 | 36.5490 | 2069 | 69 | 2071 | 14 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.6190 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 66.6667 | 100.0000 | 50.0000 | 96.2264 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l100_m0_e0 | het | 56.5874 | 39.7258 | 98.3185 | 59.7124 | 2869 | 4353 | 2865 | 49 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l125_m0_e0 | het | 48.9678 | 32.6289 | 98.0822 | 65.3700 | 1436 | 2965 | 1432 | 28 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m0_e0 | het | 43.5638 | 28.0338 | 97.6716 | 69.5976 | 797 | 2046 | 797 | 19 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m1_e0 | het | 53.4835 | 36.7982 | 97.8528 | 67.3388 | 2556 | 4390 | 2552 | 56 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e0 | het | 54.9832 | 38.2239 | 97.9130 | 71.6136 | 2772 | 4480 | 2768 | 59 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l150_m2_e1 | het | 55.1935 | 38.4322 | 97.8827 | 71.7300 | 2824 | 4524 | 2820 | 61 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m0_e0 | het | 33.2370 | 20.1049 | 95.8333 | 85.2399 | 115 | 457 | 115 | 5 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m1_e0 | het | 40.2130 | 25.3497 | 97.2103 | 81.1869 | 453 | 1334 | 453 | 13 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e0 | het | 41.9263 | 26.7010 | 97.5518 | 84.3317 | 518 | 1422 | 518 | 13 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | map_l250_m2_e1 | het | 42.3276 | 27.0229 | 97.6103 | 84.4394 | 531 | 1434 | 531 | 13 | 0 | 0.0000 | |
| mlin-fermikit | SNP | tv | tech_badpromoters | het | 92.0635 | 87.8788 | 96.6667 | 33.3333 | 29 | 4 | 29 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | func_cds | * | 99.5516 | 99.7753 | 99.3289 | 89.8846 | 444 | 1 | 444 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | func_cds | het | 99.3039 | 100.0000 | 98.6175 | 41.5094 | 214 | 0 | 214 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 94.8617 | 90.9091 | 99.1736 | 77.2556 | 120 | 12 | 120 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 66.6667 | 56.2500 | 81.8182 | 99.9089 | 9 | 7 | 9 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 73.3215 | 58.4000 | 98.4848 | 34.0000 | 73 | 52 | 65 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l100_m0_e0 | hetalt | 81.2065 | 75.7576 | 87.5000 | 92.6380 | 25 | 8 | 21 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | * | map_l125_m2_e1 | hetalt | 86.9872 | 79.0698 | 96.6667 | 94.6903 | 34 | 9 | 29 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | C6_15 | * | * | 0.0000 | 0.0000 | 25.0000 | 98.0488 | 0 | 7 | 1 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | C6_15 | * | het | 0.0000 | 0.0000 | 91.4286 | 0 | 7 | 0 | 3 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | C6_15 | HG002compoundhet | * | 0.0000 | 0.0000 | 94.2857 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | C6_15 | HG002compoundhet | het | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 67.0371 | 50.6098 | 99.2537 | 54.5763 | 166 | 162 | 133 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 93.4783 | 95.5556 | 91.4894 | 52.5253 | 43 | 2 | 43 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | * | 85.0785 | 89.2857 | 81.2500 | 90.6158 | 25 | 3 | 26 | 6 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | het | 85.4749 | 89.4737 | 81.8182 | 90.9836 | 17 | 2 | 18 | 4 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 66.6667 | 75.0000 | 60.0000 | 80.0000 | 3 | 1 | 3 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 75.1105 | 65.3846 | 88.2353 | 72.5806 | 17 | 9 | 15 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 75.1105 | 65.3846 | 88.2353 | 72.5806 | 17 | 9 | 15 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 76.5957 | 66.6667 | 90.0000 | 71.0145 | 20 | 10 | 18 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 92.5134 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 91.7293 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | * | 94.5455 | 96.2963 | 92.8571 | 91.5152 | 26 | 1 | 26 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.4545 | 100.0000 | 91.3043 | 90.1709 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.5455 | 96.2963 | 92.8571 | 92.3077 | 26 | 1 | 26 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e0 | het | 95.4545 | 100.0000 | 91.3043 | 91.2214 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 92.1622 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | het | 95.4545 | 100.0000 | 91.3043 | 91.3858 | 20 | 0 | 21 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 50.0000 | 50.0000 | 50.0000 | 89.4737 | 2 | 2 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 94.2029 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 91.9192 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |