PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40451-40500 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 94.1176 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 28.5714 | 92.5926 | 0 | 0 | 4 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 0.0000 | 0.0000 | 60.0000 | 89.5833 | 0 | 0 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 13.3333 | 83.5165 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 13.3333 | 82.7586 | 0 | 0 | 2 | 13 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 97.9487 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 97.7011 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 97.9021 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 97.6562 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 98.7755 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 98.6301 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 98.9209 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 98.7952 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 98.9474 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 98.8281 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 98.3193 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m0_e0 | het | 0.0000 | 0.0000 | 98.0769 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m1_e0 | * | 0.0000 | 0.0000 | 98.5714 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m1_e0 | het | 0.0000 | 0.0000 | 98.3696 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m2_e0 | * | 0.0000 | 0.0000 | 98.7013 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m2_e0 | het | 0.0000 | 0.0000 | 98.5366 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m2_e1 | * | 0.0000 | 0.0000 | 98.7395 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l150_m2_e1 | het | 0.0000 | 0.0000 | 98.5849 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 99.2754 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 99.1870 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.2908 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 99.2063 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | tech_badpromoters | * | 0.0000 | 0.0000 | 80.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C6_15 | tech_badpromoters | het | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | * | 14.2857 | 8.3333 | 50.0000 | 77.7778 | 1 | 11 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | func_cds | het | 20.0000 | 12.5000 | 50.0000 | 77.7778 | 1 | 7 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 91.0448 | 3 | 9 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l125_m0_e0 | het | 40.0000 | 33.3333 | 50.0000 | 90.4762 | 3 | 6 | 3 | 3 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | * | 54.5455 | 42.8571 | 75.0000 | 89.1892 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m0_e0 | het | 54.5455 | 42.8571 | 75.0000 | 88.2353 | 3 | 4 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | * | 31.5789 | 20.0000 | 75.0000 | 94.3662 | 3 | 12 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m1_e0 | het | 33.3333 | 21.4286 | 75.0000 | 94.0299 | 3 | 11 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | * | 28.5714 | 17.6471 | 75.0000 | 95.3488 | 3 | 14 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e0 | het | 30.0000 | 18.7500 | 75.0000 | 95.0617 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | * | 27.2727 | 16.6667 | 75.0000 | 95.4023 | 3 | 15 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l150_m2_e1 | het | 30.0000 | 18.7500 | 75.0000 | 95.1220 | 3 | 13 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 88.2353 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 85.7143 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | * | 33.3333 | 25.0000 | 50.0000 | 94.5946 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m1_e0 | het | 40.0000 | 33.3333 | 50.0000 | 93.9394 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | * | 28.5714 | 20.0000 | 50.0000 | 95.4545 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e0 | het | 40.0000 | 33.3333 | 50.0000 | 95.0000 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | * | 28.5714 | 20.0000 | 50.0000 | 95.5556 | 1 | 4 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l250_m2_e1 | het | 40.0000 | 33.3333 | 50.0000 | 95.1220 | 1 | 2 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | D1_5 | decoy | * | 77.4194 | 75.0000 | 80.0000 | 99.9600 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |