PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40401-40450 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 0.0000 | 0.0000 | 90.4762 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 0.0000 | 0.0000 | 33.3333 | 95.5224 | 0 | 1 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 96.1538 | 0 | 1 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | C1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapplat | INDEL | D1_5 | func_cds | * | 86.3919 | 81.7610 | 91.5789 | 51.7766 | 130 | 29 | 174 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | func_cds | het | 81.7516 | 78.8235 | 84.9057 | 60.5948 | 67 | 18 | 90 | 16 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l100_m0_e0 | homalt | 86.0150 | 75.9690 | 99.1228 | 89.0173 | 196 | 62 | 226 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m1_e0 | homalt | 86.8336 | 77.6504 | 98.4802 | 88.9449 | 271 | 78 | 324 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e0 | homalt | 87.4375 | 78.5714 | 98.5591 | 89.4013 | 286 | 78 | 342 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l125_m2_e1 | homalt | 87.2327 | 78.2258 | 98.5836 | 89.4248 | 291 | 81 | 348 | 5 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m1_e0 | homalt | 83.1300 | 71.9298 | 98.4615 | 91.6560 | 164 | 64 | 192 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e0 | homalt | 84.2469 | 73.5537 | 98.5782 | 91.9064 | 178 | 64 | 208 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l150_m2_e1 | homalt | 84.2502 | 73.7903 | 98.1651 | 91.8045 | 183 | 65 | 214 | 4 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | * | 82.6230 | 78.2609 | 87.5000 | 98.7626 | 36 | 10 | 42 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | map_l250_m0_e0 | het | 80.7713 | 78.7879 | 82.8571 | 98.8267 | 26 | 7 | 29 | 6 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | segdup | hetalt | 60.6593 | 46.1538 | 88.4615 | 98.5126 | 24 | 28 | 23 | 3 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | homalt | 75.0000 | 66.6667 | 85.7143 | 65.0000 | 6 | 3 | 6 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | * | 38.1503 | 25.5814 | 75.0000 | 63.6364 | 11 | 32 | 6 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | func_cds | het | 39.0244 | 27.5862 | 66.6667 | 64.7059 | 8 | 21 | 4 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 36.9771 | 25.1969 | 69.4444 | 73.3333 | 32 | 95 | 25 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 43.2741 | 27.9883 | 95.3488 | 70.3448 | 96 | 247 | 82 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 81.8182 | 0 | 47 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | * | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | HG002compoundhet | het | 0.0000 | 0.0000 | 6.2500 | 65.2174 | 0 | 0 | 1 | 15 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 92.8571 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 0.0000 | 0.0000 | 25.0000 | 74.4681 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 0.0000 | 0.0000 | 25.0000 | 73.9130 | 0 | 0 | 3 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | segdup | * | 0.0000 | 0.0000 | 50.0000 | 93.7500 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C16_PLUS | segdup | het | 0.0000 | 0.0000 | 50.0000 | 93.1034 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | decoy | * | 0.0000 | 0.0000 | 99.9756 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | decoy | het | 0.0000 | 0.0000 | 99.9742 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | func_cds | * | 0.0000 | 0.0000 | 33.3333 | 85.7143 | 0 | 0 | 3 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | func_cds | het | 0.0000 | 0.0000 | 14.2857 | 86.7925 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 45.4545 | 92.3611 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 14.2857 | 90.1408 | 0 | 0 | 1 | 6 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 86.1111 | 0 | 0 | 0 | 5 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 0.0000 | 0.0000 | 9.0909 | 81.6667 | 0 | 0 | 1 | 10 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 0.0000 | 0.0000 | 10.0000 | 82.7586 | 0 | 0 | 1 | 9 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapvard | INDEL | C1_5 | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 90.9091 | 95.6175 | 0 | 0 | 10 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m1_e0 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.4039 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e0 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.7248 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l100_m2_e1 | homalt | 0.0000 | 0.0000 | 95.6522 | 94.8198 | 0 | 0 | 22 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 20.0000 | 98.5229 | 0 | 0 | 2 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 11.1111 | 98.4456 | 0 | 0 | 1 | 8 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C1_5 | map_siren | homalt | 0.0000 | 0.0000 | 94.7368 | 94.0718 | 0 | 0 | 36 | 2 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 94.8718 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 50.0000 | 93.3333 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |