PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
40001-40050 / 86044 show all | |||||||||||||||
| dgrover-gatk | INDEL | I16_PLUS | map_siren | het | 93.2039 | 97.9592 | 88.8889 | 91.7808 | 48 | 1 | 48 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | * | 98.9474 | 100.0000 | 97.9167 | 95.9253 | 47 | 0 | 47 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.6524 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | func_cds | * | 99.4505 | 100.0000 | 98.9071 | 35.1064 | 180 | 0 | 181 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 42.5926 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.2507 | 97.3988 | 99.1176 | 69.3969 | 337 | 9 | 337 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6764 | 99.6119 | 99.7409 | 78.6681 | 770 | 3 | 770 | 2 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 81.2244 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 82.8729 | 92.5926 | 75.0000 | 96.8504 | 25 | 2 | 3 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7814 | 99.6361 | 99.9271 | 72.2301 | 1369 | 5 | 1370 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 93.5774 | 90.1961 | 97.2222 | 94.4012 | 46 | 5 | 35 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.0000 | 96.0000 | 96.0000 | 62.1212 | 24 | 1 | 24 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 80.0000 | 100.0000 | 66.6667 | 91.6667 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 98.4653 | 98.1595 | 98.7730 | 87.5096 | 320 | 6 | 322 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 98.7103 | 98.3269 | 99.0968 | 85.3053 | 764 | 13 | 768 | 7 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 98.7364 | 98.3607 | 99.1150 | 86.3291 | 780 | 13 | 784 | 7 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 98.7630 | 98.3951 | 99.1337 | 86.3950 | 797 | 13 | 801 | 7 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 97.9098 | 97.3958 | 98.4293 | 90.7996 | 187 | 5 | 188 | 3 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 98.3497 | 97.9424 | 98.7603 | 87.9181 | 476 | 10 | 478 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e0 | het | 98.3863 | 97.9879 | 98.7879 | 88.9681 | 487 | 10 | 489 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l125_m2_e1 | het | 98.4213 | 98.0315 | 98.8142 | 89.0239 | 498 | 10 | 500 | 6 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 97.1200 | 95.2830 | 99.0291 | 93.8544 | 101 | 5 | 102 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m1_e0 | het | 97.9843 | 97.3244 | 98.6532 | 90.9589 | 291 | 8 | 293 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e0 | het | 98.0498 | 97.4110 | 98.6971 | 91.7517 | 301 | 8 | 303 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l150_m2_e1 | het | 98.0992 | 97.4763 | 98.7302 | 91.7883 | 309 | 8 | 311 | 4 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 94.8276 | 91.6667 | 98.2143 | 97.0727 | 55 | 5 | 55 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 95.3125 | 92.4242 | 98.3871 | 97.2222 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 95.3125 | 92.4242 | 98.3871 | 97.3195 | 61 | 5 | 61 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | segdup | het | 99.1652 | 99.2565 | 99.0741 | 95.4899 | 534 | 4 | 535 | 5 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 0.0000 | 88.8889 | 0.0000 | 98.3333 | 8 | 1 | 0 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.3506 | 99.1379 | 99.5643 | 72.3494 | 460 | 4 | 457 | 2 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | func_cds | * | 99.9284 | 99.9614 | 99.8954 | 24.8199 | 18143 | 7 | 18140 | 19 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | func_cds | het | 99.8970 | 99.9642 | 99.8299 | 26.9739 | 11157 | 4 | 11154 | 19 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.7941 | 99.9742 | 99.6146 | 59.9671 | 3877 | 1 | 3877 | 15 | 0 | 0.0000 | |
| dgrover-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6801 | 99.9599 | 99.4019 | 61.3678 | 2493 | 1 | 2493 | 15 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | func_cds | * | 99.9347 | 99.9565 | 99.9130 | 23.1014 | 13781 | 6 | 13779 | 12 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | func_cds | het | 99.9118 | 99.9647 | 99.8590 | 25.0066 | 8501 | 3 | 8499 | 12 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.8771 | 100.0000 | 99.7546 | 51.5937 | 2439 | 0 | 2439 | 6 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8105 | 100.0000 | 99.6217 | 53.8819 | 1580 | 0 | 1580 | 6 | 0 | 0.0000 | |
| dgrover-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.8385 | 99.8386 | 99.8385 | 31.8944 | 2474 | 4 | 2473 | 4 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | func_cds | * | 99.9085 | 99.9771 | 99.8400 | 29.8268 | 4370 | 1 | 4369 | 7 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | func_cds | het | 99.8496 | 99.9624 | 99.7370 | 32.6247 | 2656 | 1 | 2655 | 7 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.5499 | 99.3263 | 99.7744 | 49.3526 | 1327 | 9 | 1327 | 3 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.2958 | 98.9474 | 99.6466 | 51.0098 | 846 | 9 | 846 | 3 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7015 | 99.8620 | 99.5415 | 64.0336 | 2171 | 3 | 2171 | 10 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.5325 | 99.7837 | 99.2826 | 64.9925 | 1384 | 3 | 1384 | 10 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6537 | 99.9306 | 99.3785 | 69.0135 | 1439 | 1 | 1439 | 9 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.4553 | 99.8906 | 99.0239 | 69.8002 | 913 | 1 | 913 | 9 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 97.6190 | 97.6190 | 97.6190 | 89.5262 | 41 | 1 | 41 | 1 | 0 | 0.0000 | |
| dgrover-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 97.2222 | 97.2222 | 97.2222 | 88.4244 | 35 | 1 | 35 | 1 | 0 | 0.0000 | |