PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
351-400 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 97.3133 | 95.5112 | 99.1848 | 77.7374 | 383 | 18 | 365 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 98.3658 | 97.2888 | 99.4670 | 68.3001 | 933 | 26 | 933 | 5 | 5 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l100_m2_e1 | homalt | 98.5075 | 98.5075 | 98.5075 | 84.8073 | 66 | 1 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e1 | homalt | 98.3740 | 97.5806 | 99.1803 | 86.8888 | 242 | 6 | 242 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m2_e0 | homalt | 98.5386 | 97.5207 | 99.5781 | 86.9780 | 236 | 6 | 236 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | * | hetalt | 96.8333 | 93.8702 | 99.9896 | 62.1760 | 9617 | 628 | 9660 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | * | 97.3913 | 95.7265 | 99.1150 | 87.6096 | 112 | 5 | 112 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m1_e0 | het | 96.8254 | 95.3125 | 98.3871 | 89.1986 | 61 | 3 | 61 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | het | 73.3937 | 95.8580 | 59.4595 | 79.8913 | 162 | 7 | 66 | 45 | 45 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | * | 96.7480 | 94.4444 | 99.1667 | 87.9154 | 119 | 7 | 119 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002complexvar | hetalt | 97.5400 | 95.2663 | 99.9249 | 72.3364 | 1288 | 64 | 1331 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 96.1375 | 92.6622 | 99.8837 | 34.9962 | 1528 | 121 | 1718 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.7835 | 99.7835 | 99.7835 | 62.5000 | 461 | 1 | 461 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 94.1097 | 95.4459 | 92.8105 | 80.6084 | 503 | 24 | 426 | 33 | 33 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 97.3114 | 96.4304 | 98.2086 | 62.1384 | 1864 | 69 | 1864 | 34 | 34 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 96.1914 | 92.7644 | 99.8814 | 32.5739 | 1500 | 117 | 1685 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | HG002compoundhet | hetalt | 96.8240 | 93.8528 | 99.9896 | 57.7055 | 9588 | 628 | 9588 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 94.1124 | 89.0961 | 99.7271 | 37.2432 | 621 | 76 | 731 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e0 | het | 95.6522 | 92.9577 | 98.5075 | 89.2456 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m1_e0 | homalt | 98.4479 | 97.3684 | 99.5516 | 86.1491 | 222 | 6 | 222 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.8617 | 100.0000 | 99.7238 | 62.2523 | 361 | 0 | 361 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | * | 96.3855 | 93.7500 | 99.1736 | 88.0788 | 120 | 8 | 120 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | map_l125_m2_e1 | het | 95.6522 | 92.9577 | 98.5075 | 89.4155 | 66 | 5 | 66 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | homalt | 97.6190 | 96.4706 | 98.7952 | 89.0933 | 82 | 3 | 82 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e1 | homalt | 98.9189 | 98.3871 | 99.4565 | 84.6603 | 366 | 6 | 366 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.4186 | 99.4186 | 99.4186 | 80.4989 | 171 | 1 | 171 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m2_e0 | homalt | 98.8950 | 98.3516 | 99.4444 | 84.6743 | 358 | 6 | 358 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m1_e0 | homalt | 98.8473 | 98.2808 | 99.4203 | 83.7952 | 343 | 6 | 343 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 96.3087 | 93.0088 | 99.8513 | 37.7661 | 1796 | 135 | 2014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l125_m0_e0 | homalt | 97.9592 | 97.2973 | 98.6301 | 85.5015 | 144 | 4 | 144 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 98.9011 | 100.0000 | 97.8261 | 81.7460 | 45 | 0 | 45 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e1 | homalt | 99.2713 | 98.8710 | 99.6748 | 82.3782 | 613 | 7 | 613 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m2_e0 | homalt | 99.2605 | 98.8543 | 99.6700 | 82.3014 | 604 | 7 | 604 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m1_e0 | homalt | 99.2366 | 98.8176 | 99.6593 | 81.5176 | 585 | 7 | 585 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l100_m0_e0 | homalt | 98.8327 | 98.4496 | 99.2188 | 81.9337 | 254 | 4 | 254 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 89.5833 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 94.2917 | 89.4359 | 99.7050 | 39.9291 | 872 | 103 | 1014 | 3 | 3 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.8185 | 95.7447 | 97.9167 | 79.0393 | 45 | 2 | 47 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 95.6298 | 98.9362 | 92.5373 | 61.3647 | 744 | 8 | 744 | 60 | 60 | 100.0000 | |
| raldana-dualsentieon | INDEL | D16_PLUS | HG002compoundhet | homalt | 53.3333 | 100.0000 | 36.3636 | 74.1176 | 8 | 0 | 8 | 14 | 14 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 91.9540 | 97.5610 | 86.9565 | 86.2687 | 40 | 1 | 40 | 6 | 6 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 94.5480 | 89.9642 | 99.6241 | 63.9077 | 251 | 28 | 265 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 92.8571 | 100.0000 | 86.6667 | 57.1429 | 13 | 0 | 13 | 2 | 2 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 96.1472 | 92.7162 | 99.8418 | 68.4316 | 611 | 48 | 631 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 98.7406 | 99.4924 | 98.0000 | 58.7629 | 196 | 1 | 196 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.6120 | 90.0000 | 99.7222 | 61.7428 | 342 | 38 | 359 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | INDEL | D6_15 | segdup | * | 95.4424 | 93.1937 | 97.8022 | 92.3817 | 178 | 13 | 178 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 91.6667 | 100.0000 | 84.6154 | 84.1463 | 22 | 0 | 22 | 4 | 4 | 100.0000 | |
| raldana-dualsentieon | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 94.8795 | 90.5594 | 99.6324 | 53.1842 | 259 | 27 | 271 | 1 | 1 | 100.0000 | |