PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
39101-39150 / 86044 show all | |||||||||||||||
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 75.0000 | 75.0000 | 75.0000 | 98.1221 | 3 | 1 | 3 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 50.0000 | 50.0000 | 50.0000 | 98.2759 | 1 | 1 | 1 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 81.8182 | 81.8182 | 81.8182 | 96.7262 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 76.9231 | 83.3333 | 71.4286 | 96.3731 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 81.8182 | 81.8182 | 81.8182 | 97.1354 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 76.9231 | 83.3333 | 71.4286 | 96.9565 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 81.8182 | 81.8182 | 81.8182 | 97.1429 | 9 | 2 | 9 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 76.9231 | 83.3333 | 71.4286 | 96.9697 | 5 | 1 | 5 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.2537 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 0.0000 | 0.0000 | 99.5595 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 0.0000 | 0.0000 | 99.2481 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 0.0000 | 0.0000 | 99.5951 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 0.0000 | 0.0000 | 99.3151 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 0.0000 | 0.0000 | 99.6000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 0.0000 | 0.0000 | 99.3197 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| asubramanian-gatk | INDEL | I16_PLUS | map_siren | het | 89.3617 | 85.7143 | 93.3333 | 93.1921 | 42 | 7 | 42 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | func_cds | * | 99.1720 | 99.4444 | 98.9011 | 44.5122 | 179 | 1 | 180 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | func_cds | het | 98.3607 | 100.0000 | 96.7742 | 59.4771 | 59 | 0 | 60 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5075 | 95.9538 | 99.1124 | 69.7674 | 332 | 14 | 335 | 3 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.2861 | 98.8357 | 99.7406 | 78.6722 | 764 | 9 | 769 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.3599 | 98.9071 | 99.8168 | 81.2629 | 543 | 6 | 545 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.5686 | 97.2591 | 99.9139 | 42.5606 | 1100 | 31 | 1161 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.4382 | 90.1961 | 99.0991 | 85.5280 | 46 | 5 | 110 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | * | 96.4824 | 96.0000 | 96.9697 | 58.2278 | 24 | 1 | 32 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 90.9091 | 100.0000 | 83.3333 | 85.3659 | 2 | 0 | 5 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m0_e0 | het | 87.4852 | 80.3681 | 95.9854 | 91.2376 | 262 | 64 | 263 | 11 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m1_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 89.1688 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e0 | hetalt | 96.5517 | 95.4545 | 97.6744 | 90.1376 | 42 | 2 | 42 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l100_m2_e1 | hetalt | 96.6292 | 95.5556 | 97.7273 | 90.1345 | 43 | 2 | 43 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 92.4426 | 88.7097 | 96.5035 | 91.8681 | 275 | 35 | 276 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l125_m0_e0 | het | 89.6323 | 85.4167 | 94.2857 | 93.1800 | 164 | 28 | 165 | 10 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | * | 91.8129 | 89.2045 | 94.5783 | 94.1487 | 157 | 19 | 157 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l150_m0_e0 | het | 87.2549 | 83.9623 | 90.8163 | 95.3356 | 89 | 17 | 89 | 9 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | * | 86.9565 | 83.3333 | 90.9091 | 98.6155 | 20 | 4 | 20 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m0_e0 | het | 82.7586 | 80.0000 | 85.7143 | 98.8362 | 12 | 3 | 12 | 2 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | * | 88.1188 | 83.9623 | 92.7083 | 97.0525 | 89 | 17 | 89 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m1_e0 | het | 82.4561 | 78.3333 | 87.0370 | 97.7070 | 47 | 13 | 47 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | * | 87.8505 | 83.1858 | 93.0693 | 97.3379 | 94 | 19 | 94 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e0 | het | 82.2581 | 77.2727 | 87.9310 | 97.8716 | 51 | 15 | 51 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | * | 87.9630 | 83.3333 | 93.1373 | 97.3953 | 95 | 19 | 95 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_l250_m2_e1 | het | 82.2581 | 77.2727 | 87.9310 | 97.9454 | 51 | 15 | 51 | 7 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | map_siren | hetalt | 97.2727 | 95.5357 | 99.0741 | 87.9867 | 107 | 5 | 107 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I1_5 | segdup | het | 98.4123 | 97.7695 | 99.0637 | 96.0327 | 526 | 12 | 529 | 5 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.0447 | 96.7213 | 99.4048 | 55.2000 | 118 | 4 | 167 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | INDEL | I6_15 | map_siren | hetalt | 97.1831 | 95.8333 | 98.5714 | 77.4194 | 69 | 3 | 69 | 1 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | HG002complexvar | hetalt | 93.8843 | 91.6129 | 96.2712 | 41.3519 | 284 | 26 | 284 | 11 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | hetalt | 95.0437 | 94.5476 | 95.5451 | 26.8439 | 815 | 47 | 815 | 38 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 72.5490 | 0 | 0 | 0 | 14 | 0 | 0.0000 | ||
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 44.7761 | 100.0000 | 28.8462 | 82.9508 | 15 | 0 | 15 | 37 | 0 | 0.0000 | |