PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3851-3900 / 86044 show all | |||||||||||||||
| anovak-vg | INDEL | D16_PLUS | tech_badpromoters | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | D1_5 | func_cds | homalt | 94.3662 | 90.5405 | 98.5294 | 29.8969 | 67 | 7 | 67 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 65.1163 | 63.6364 | 66.6667 | 99.3328 | 7 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 70.1754 | 62.5000 | 80.0000 | 99.4253 | 5 | 3 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1649 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 63.1579 | 60.0000 | 66.6667 | 99.3066 | 6 | 4 | 6 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 57.1429 | 80.0000 | 99.3990 | 4 | 3 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 66.6667 | 100.0000 | 50.0000 | 99.1416 | 2 | 0 | 2 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m0_e0 | homalt | 52.6316 | 38.4615 | 83.3333 | 98.9111 | 5 | 8 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m1_e0 | homalt | 73.0707 | 59.6491 | 94.2857 | 96.1957 | 34 | 23 | 33 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e0 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.3844 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D1_5 | map_l250_m2_e1 | homalt | 74.7056 | 61.6667 | 94.7368 | 96.4912 | 37 | 23 | 36 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.6301 | 3 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.2143 | 3 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 50.0000 | 50.0000 | 50.0000 | 98.5507 | 2 | 2 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.0769 | 2 | 0 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 55.3846 | 42.8571 | 78.2609 | 99.2474 | 18 | 24 | 18 | 5 | 5 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 8.6957 | 4.7619 | 50.0000 | 75.0000 | 1 | 20 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m0_e0 | homalt | 81.8182 | 75.0000 | 90.0000 | 88.7640 | 18 | 6 | 18 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m1_e0 | homalt | 82.8729 | 75.0000 | 92.5926 | 84.7025 | 48 | 16 | 50 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e0 | homalt | 83.1614 | 75.3846 | 92.7273 | 85.4111 | 49 | 16 | 51 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l100_m2_e1 | homalt | 82.7498 | 74.6269 | 92.8571 | 85.4167 | 50 | 17 | 52 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m0_e0 | homalt | 91.6667 | 91.6667 | 91.6667 | 91.4286 | 11 | 1 | 11 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m1_e0 | homalt | 84.8485 | 82.3529 | 87.5000 | 86.6109 | 28 | 6 | 28 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e0 | homalt | 85.7143 | 83.3333 | 88.2353 | 86.8726 | 30 | 6 | 30 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l125_m2_e1 | homalt | 86.1111 | 83.7838 | 88.5714 | 86.6412 | 31 | 6 | 31 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m0_e0 | homalt | 93.3333 | 100.0000 | 87.5000 | 93.0435 | 7 | 0 | 7 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m1_e0 | homalt | 89.7959 | 84.6154 | 95.6522 | 88.2653 | 22 | 4 | 22 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e0 | homalt | 88.8889 | 85.7143 | 92.3077 | 87.9630 | 24 | 4 | 24 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l150_m2_e1 | homalt | 89.2857 | 86.2069 | 92.5926 | 87.6147 | 25 | 4 | 25 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | * | 84.5070 | 83.3333 | 85.7143 | 97.8125 | 5 | 1 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m0_e0 | het | 77.4194 | 75.0000 | 80.0000 | 98.0695 | 3 | 1 | 4 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.2857 | 5 | 0 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e0 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2149 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | map_l250_m2_e1 | homalt | 92.3077 | 100.0000 | 85.7143 | 94.2623 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | * | 62.0690 | 52.9412 | 75.0000 | 36.8421 | 9 | 8 | 9 | 3 | 3 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | het | 62.5000 | 50.0000 | 83.3333 | 14.2857 | 5 | 5 | 5 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | D6_15 | tech_badpromoters | homalt | 66.6667 | 66.6667 | 66.6667 | 50.0000 | 4 | 2 | 4 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.5000 | 0 | 27 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 24.1692 | 17.0213 | 41.6667 | 74.4681 | 8 | 39 | 5 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 53.3333 | 100.0000 | 36.3636 | 63.3333 | 4 | 0 | 4 | 7 | 7 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 66.6667 | 0 | 3 | 0 | 1 | 1 | 100.0000 | ||
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | * | 23.5294 | 18.1818 | 33.3333 | 68.4211 | 2 | 9 | 2 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 0.0000 | 0.0000 | 20.0000 | 64.2857 | 0 | 2 | 1 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | * | 22.2222 | 16.6667 | 33.3333 | 76.9231 | 1 | 5 | 1 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 0.0000 | 0.0000 | 33.3333 | 66.6667 | 0 | 2 | 1 | 2 | 2 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | * | 27.2727 | 20.0000 | 42.8571 | 80.5556 | 3 | 12 | 3 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 33.3333 | 33.3333 | 33.3333 | 79.3103 | 1 | 2 | 2 | 4 | 4 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m0_e0 | * | 33.3333 | 25.0000 | 50.0000 | 77.7778 | 1 | 3 | 1 | 1 | 1 | 100.0000 | |
| anovak-vg | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 0.0000 | 0.0000 | 50.0000 | 66.6667 | 0 | 1 | 1 | 1 | 1 | 100.0000 | |