PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38801-38850 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 94.5055 | 91.4894 | 97.7273 | 89.3462 | 43 | 4 | 43 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 94.6463 | 91.6667 | 97.8261 | 89.7092 | 44 | 4 | 45 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l100_m2_e1 | hetalt | 94.9695 | 92.1569 | 97.9592 | 89.3478 | 47 | 4 | 48 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m0_e0 | het | 97.0991 | 99.0099 | 95.2607 | 91.9833 | 200 | 2 | 201 | 10 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | * | 93.8776 | 100.0000 | 88.4615 | 97.3537 | 46 | 0 | 46 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l250_m0_e0 | het | 91.6667 | 100.0000 | 84.6154 | 97.2898 | 33 | 0 | 33 | 6 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | map_siren | hetalt | 96.3415 | 94.0476 | 98.7500 | 89.6507 | 79 | 5 | 79 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D1_5 | segdup | het | 99.4950 | 99.5665 | 99.4236 | 94.8997 | 689 | 3 | 690 | 4 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 84.2105 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 93.6937 | 91.2281 | 96.2963 | 99.4858 | 52 | 5 | 52 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 91.3580 | 88.0952 | 94.8718 | 99.3893 | 37 | 5 | 37 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 94.7368 | 94.7368 | 94.7368 | 80.8081 | 18 | 1 | 18 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 71.1712 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 95.4545 | 92.6471 | 98.4375 | 72.7660 | 63 | 5 | 63 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 95.0355 | 91.7808 | 98.5294 | 72.6908 | 67 | 6 | 67 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | * | 98.6301 | 98.6301 | 98.6301 | 92.8571 | 72 | 1 | 72 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l150_m1_e0 | het | 98.7342 | 100.0000 | 97.5000 | 94.2775 | 39 | 0 | 39 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.4340 | 99.0991 | 99.7712 | 75.6817 | 440 | 4 | 436 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6954 | 99.5943 | 99.7967 | 57.2917 | 491 | 2 | 491 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7636 | 100.0000 | 99.5283 | 47.2637 | 211 | 0 | 211 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.3051 | 100.0000 | 96.6667 | 84.7973 | 87 | 0 | 87 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 97.9592 | 100.0000 | 96.0000 | 87.4687 | 52 | 0 | 48 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 97.8723 | 100.0000 | 95.8333 | 84.8101 | 23 | 0 | 23 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 94.9640 | 97.0588 | 92.9577 | 96.7356 | 66 | 2 | 66 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 92.3077 | 95.4545 | 89.3617 | 96.6284 | 42 | 2 | 42 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0536 | 100.0000 | 98.1250 | 68.1909 | 157 | 0 | 157 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 97.4790 | 100.0000 | 95.0820 | 79.2517 | 61 | 0 | 58 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 86.2069 | 89.2857 | 83.3333 | 96.8051 | 25 | 3 | 25 | 5 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 84.4720 | 89.4737 | 80.0000 | 97.0545 | 17 | 2 | 16 | 4 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 97.5845 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 93.3333 | 93.3333 | 93.3333 | 96.4539 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.8992 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 93.7500 | 93.7500 | 93.7500 | 96.9349 | 15 | 1 | 15 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.1074 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.0109 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | * | 96.4286 | 100.0000 | 93.1034 | 96.8581 | 27 | 0 | 27 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 95.2381 | 100.0000 | 90.9091 | 96.7311 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | * | 94.7368 | 100.0000 | 90.0000 | 97.2603 | 27 | 0 | 27 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 93.0233 | 100.0000 | 86.9565 | 97.1106 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | * | 93.1034 | 96.4286 | 90.0000 | 97.3238 | 27 | 1 | 27 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 93.0233 | 100.0000 | 86.9565 | 97.1744 | 20 | 0 | 20 | 3 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 97.1787 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 96.3265 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | * | 93.7500 | 100.0000 | 88.2353 | 97.1761 | 15 | 0 | 15 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.4045 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | * | 94.4444 | 100.0000 | 89.4737 | 97.3865 | 17 | 0 | 17 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.6102 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | * | 91.8919 | 94.4444 | 89.4737 | 97.4255 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 96.6543 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| astatham-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 97.6000 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |