PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38501-38550 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.8944 | 96.5596 | 99.2665 | 83.6203 | 421 | 15 | 406 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 97.0766 | 95.1952 | 99.0338 | 86.4144 | 634 | 32 | 615 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 88.3948 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 87.7907 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 93.6008 | 88.7218 | 99.0476 | 86.7591 | 118 | 15 | 104 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 93.9985 | 89.6226 | 98.8235 | 85.8333 | 95 | 11 | 84 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.5521 | 92.6829 | 98.6047 | 87.0091 | 228 | 18 | 212 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 97.0766 | 95.1952 | 99.0338 | 86.4144 | 634 | 32 | 615 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.4336 | 93.7500 | 99.2754 | 88.7163 | 150 | 10 | 137 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 57.1429 | 50.0000 | 66.6667 | 89.2857 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1009 | 98.8095 | 99.3939 | 76.4286 | 166 | 2 | 164 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.6667 | 100.0000 | 97.3684 | 76.3975 | 37 | 0 | 37 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 79.0123 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 95.1852 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 93.0769 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.6923 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | * | 92.3077 | 92.3077 | 92.3077 | 94.1964 | 24 | 2 | 24 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 92.0000 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 96.9231 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 94.8177 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | het | 94.4444 | 94.4444 | 94.4444 | 93.2331 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 94.8473 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | het | 94.4444 | 94.4444 | 94.4444 | 93.2836 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 83.3333 | 100.0000 | 71.4286 | 96.8326 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 96.5066 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 96.1538 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.4576 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | * | 90.3226 | 93.3333 | 87.5000 | 95.2522 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 93.6709 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.5000 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.6522 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 94.7644 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | * | 87.5000 | 93.3333 | 82.3529 | 95.6633 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 94.7917 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 75.0000 | 100.0000 | 60.0000 | 97.1591 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m0_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.8586 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 96.5116 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m0_e0 | homalt | 66.6667 | 100.0000 | 50.0000 | 98.0198 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m1_e0 | * | 86.9565 | 90.9091 | 83.3333 | 95.7143 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 94.4882 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m1_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.1429 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | * | 86.9565 | 90.9091 | 83.3333 | 96.2025 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 95.2703 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.3856 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e1 | * | 86.9565 | 90.9091 | 83.3333 | 96.2145 | 10 | 1 | 10 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 95.3020 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I16_PLUS | map_l150_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 97.3856 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |