PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38401-38450 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | segdup | het | 99.5467 | 99.7541 | 99.3402 | 91.9297 | 5274 | 13 | 5270 | 35 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 95.0000 | 95.0000 | 95.0000 | 99.3115 | 19 | 1 | 19 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4100 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.3558 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.4949 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.9261 | 100.0000 | 99.8524 | 72.4033 | 1353 | 0 | 1353 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 87.3170 | 80.6452 | 95.1923 | 99.9131 | 100 | 24 | 99 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 81.7839 | 72.4138 | 93.9394 | 99.8971 | 63 | 24 | 62 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 97.6744 | 100.0000 | 95.4545 | 99.9492 | 21 | 0 | 21 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | * | segdup | het | 99.3844 | 99.1132 | 99.6571 | 94.2790 | 1453 | 13 | 1453 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.1349 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0645 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 88.8889 | 100.0000 | 80.0000 | 99.1135 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 80.0000 | 100.0000 | 66.6667 | 98.0392 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.6954 | 99.5943 | 99.7967 | 54.9038 | 491 | 2 | 491 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7636 | 100.0000 | 99.5283 | 45.6410 | 211 | 0 | 211 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 89.6000 | 82.3529 | 98.2456 | 96.4128 | 56 | 12 | 56 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 83.1169 | 72.7273 | 96.9697 | 96.7836 | 32 | 12 | 32 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | * | 89.6552 | 92.8571 | 86.6667 | 95.1378 | 26 | 2 | 26 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | het | 89.6047 | 94.7368 | 85.0000 | 95.3271 | 18 | 1 | 17 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 80.0000 | 80.0000 | 96.4789 | 4 | 1 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m1_e0 | homalt | 90.3226 | 93.3333 | 87.5000 | 94.3060 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9102 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 93.7500 | 88.2353 | 94.9704 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 95.6113 | 12 | 0 | 12 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 95.2174 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.1667 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.0000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 96.4539 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | * | 92.8571 | 96.2963 | 89.6552 | 95.8273 | 26 | 1 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 95.6790 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0060 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | * | 91.2281 | 92.8571 | 89.6552 | 95.9270 | 26 | 2 | 26 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 95.7831 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.0930 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | * | 87.5000 | 100.0000 | 77.7778 | 95.5224 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 94.0000 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | * | 87.5000 | 93.3333 | 82.3529 | 95.5145 | 14 | 1 | 14 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | het | 89.6552 | 92.8571 | 86.6667 | 94.4444 | 13 | 1 | 13 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m1_e0 | homalt | 0.0000 | 0.0000 | 98.7952 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | * | 88.8889 | 94.1176 | 84.2105 | 95.7965 | 16 | 1 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | het | 90.9091 | 93.7500 | 88.2353 | 94.6541 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e0 | homalt | 0.0000 | 0.0000 | 99.0654 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | * | 86.4865 | 88.8889 | 84.2105 | 95.8785 | 16 | 2 | 16 | 3 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | het | 90.9091 | 93.7500 | 88.2353 | 94.7368 | 15 | 1 | 15 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l150_m2_e1 | homalt | 0.0000 | 0.0000 | 99.0991 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 96.0526 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 95.0000 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | * | 80.0000 | 100.0000 | 66.6667 | 96.2264 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 95.5752 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |