PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38101-38150 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D6_15 | decoy | * | 66.6667 | 100.0000 | 50.0000 | 99.9115 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | decoy | het | 0.0000 | 0.0000 | 99.9476 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8544 | 100.0000 | 99.7093 | 57.3201 | 343 | 0 | 343 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 60.0000 | 66.6667 | 54.5455 | 98.9413 | 6 | 3 | 6 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m0_e0 | hetalt | 88.8889 | 84.2105 | 94.1176 | 82.2917 | 16 | 3 | 16 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 71.6279 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 93.0233 | 88.2353 | 98.3607 | 72.8889 | 60 | 8 | 60 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 92.7536 | 87.6712 | 98.4615 | 72.9167 | 64 | 9 | 64 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | * | 90.0000 | 95.7447 | 84.9057 | 94.0382 | 45 | 2 | 45 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | het | 87.5000 | 96.5517 | 80.0000 | 94.8830 | 28 | 1 | 28 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m0_e0 | hetalt | 83.3333 | 83.3333 | 83.3333 | 90.0000 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 84.2105 | 17 | 2 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 91.8919 | 89.4737 | 94.4444 | 85.9375 | 17 | 2 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m2_e1 | hetalt | 89.4737 | 85.0000 | 94.4444 | 86.3636 | 17 | 3 | 17 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | * | 92.7536 | 100.0000 | 86.4865 | 94.8611 | 32 | 0 | 32 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | het | 90.9091 | 100.0000 | 83.3333 | 95.6522 | 20 | 0 | 20 | 4 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 90.9091 | 100.0000 | 83.3333 | 88.6792 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | * | 93.4211 | 97.2603 | 89.8734 | 93.5668 | 71 | 2 | 71 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | het | 90.4762 | 97.4359 | 84.4444 | 95.1665 | 38 | 1 | 38 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m1_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 90.6977 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | * | 94.1176 | 97.5610 | 90.9091 | 93.6462 | 80 | 2 | 80 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | het | 91.8367 | 97.8261 | 86.5385 | 95.0617 | 45 | 1 | 45 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e0 | hetalt | 87.5000 | 87.5000 | 87.5000 | 91.4894 | 7 | 1 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | het | 92.0000 | 97.8723 | 86.7925 | 95.0789 | 46 | 1 | 46 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l150_m2_e1 | hetalt | 82.3529 | 77.7778 | 87.5000 | 91.7526 | 7 | 2 | 7 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | * | 85.7143 | 100.0000 | 75.0000 | 97.9487 | 6 | 0 | 6 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 97.9730 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | * | 89.4737 | 94.4444 | 85.0000 | 97.2452 | 17 | 1 | 17 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m1_e0 | het | 88.0000 | 100.0000 | 78.5714 | 97.5395 | 11 | 0 | 11 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | * | 91.3043 | 95.4545 | 87.5000 | 97.1188 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e0 | het | 90.3226 | 100.0000 | 82.3529 | 97.3725 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | * | 91.3043 | 95.4545 | 87.5000 | 97.2125 | 21 | 1 | 21 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_l250_m2_e1 | het | 90.3226 | 100.0000 | 82.3529 | 97.4551 | 14 | 0 | 14 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D6_15 | map_siren | hetalt | 95.2880 | 91.9192 | 98.9130 | 74.2297 | 91 | 8 | 91 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 95.5974 | 93.6842 | 97.5904 | 90.6846 | 89 | 6 | 81 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.1351 | 95.4545 | 96.8254 | 89.0815 | 63 | 3 | 61 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1219 | 97.2222 | 99.0385 | 80.7050 | 105 | 3 | 103 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.8967 | 92.5926 | 95.2381 | 91.1392 | 25 | 2 | 20 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 91.9540 | 90.2256 | 93.7500 | 86.9919 | 120 | 13 | 105 | 7 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 91.4755 | 89.6226 | 93.4066 | 86.1280 | 95 | 11 | 85 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 94.9161 | 93.4959 | 96.3801 | 87.9826 | 230 | 16 | 213 | 8 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 92.5926 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.7742 | 100.0000 | 93.7500 | 86.3248 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 91.2281 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.7368 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 0.0000 | 0.0000 | 98.6486 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7013 | 100.0000 | 97.4359 | 78.8043 | 37 | 0 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 96.9697 | 100.0000 | 94.1176 | 82.2917 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.3301 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |