PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
38051-38100 / 86044 show all | |||||||||||||||
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 89.8396 | 83.1683 | 97.6744 | 93.4799 | 84 | 17 | 84 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 85.7143 | 77.2727 | 96.2264 | 93.6375 | 51 | 15 | 51 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7169 | 99.5157 | 99.9189 | 27.4838 | 2466 | 12 | 2465 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | func_cds | * | 96.0000 | 100.0000 | 92.3077 | 81.9444 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | func_cds | het | 94.1176 | 100.0000 | 88.8889 | 84.7458 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5261 | 99.5261 | 99.5261 | 46.9849 | 210 | 1 | 210 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 96.0894 | 98.8506 | 93.4783 | 84.2466 | 86 | 1 | 86 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.1416 | 98.0769 | 88.6792 | 87.1671 | 51 | 1 | 47 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 98.7179 | 98.0892 | 99.3548 | 69.6078 | 154 | 3 | 154 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | het | 98.3182 | 98.3607 | 98.2759 | 81.7035 | 60 | 1 | 57 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | het | 77.2947 | 84.2105 | 71.4286 | 97.1429 | 16 | 3 | 15 | 6 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 77.4194 | 75.0000 | 80.0000 | 89.3617 | 3 | 1 | 4 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m1_e0 | hetalt | 85.1927 | 76.9231 | 95.4545 | 76.5957 | 20 | 6 | 21 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e0 | hetalt | 85.1927 | 76.9231 | 95.4545 | 78.0000 | 20 | 6 | 21 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l100_m2_e1 | hetalt | 85.2510 | 76.6667 | 96.0000 | 77.0642 | 23 | 7 | 24 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.4359 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 0.0000 | 96.0000 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.1583 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 92.1053 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | het | 92.6829 | 95.0000 | 90.4762 | 97.6000 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | hetalt | 66.6667 | 66.6667 | 66.6667 | 92.5000 | 2 | 1 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | het | 92.6829 | 95.0000 | 90.4762 | 97.6510 | 19 | 1 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | hetalt | 57.1429 | 50.0000 | 66.6667 | 92.5000 | 2 | 2 | 2 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 82.3529 | 100.0000 | 70.0000 | 97.4937 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1338 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | hetalt | 0.0000 | 0.0000 | 95.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.9697 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1061 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.1338 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | hetalt | 0.0000 | 0.0000 | 96.6667 | 0 | 2 | 0 | 1 | 0 | 0.0000 | ||
| jlack-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | * | 50.0000 | 100.0000 | 33.3333 | 98.1707 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m0_e0 | het | 50.0000 | 100.0000 | 33.3333 | 97.6923 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m1_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.0620 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e0 | het | 75.0000 | 100.0000 | 60.0000 | 98.3923 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l250_m2_e1 | het | 75.0000 | 100.0000 | 60.0000 | 98.4076 | 3 | 0 | 3 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_siren | hetalt | 89.7657 | 83.8710 | 96.5517 | 80.4054 | 26 | 5 | 28 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | decoy | * | 80.0000 | 100.0000 | 66.6667 | 99.9631 | 4 | 0 | 4 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | decoy | het | 66.6667 | 100.0000 | 50.0000 | 99.9720 | 2 | 0 | 2 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | func_cds | * | 97.2644 | 100.0000 | 94.6746 | 52.7933 | 159 | 0 | 160 | 9 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | func_cds | het | 95.0276 | 100.0000 | 90.5263 | 62.0000 | 85 | 0 | 86 | 9 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.8647 | 100.0000 | 99.7297 | 81.2373 | 369 | 0 | 369 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 40.0000 | 100.0000 | 25.0000 | 99.9965 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 40.0000 | 100.0000 | 25.0000 | 99.9650 | 1 | 0 | 1 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.7594 | 99.7374 | 99.7814 | 47.4494 | 2279 | 6 | 2282 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | * | 83.0189 | 95.6522 | 73.3333 | 97.9784 | 44 | 2 | 44 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | map_l250_m0_e0 | het | 77.5000 | 93.9394 | 65.9574 | 98.0964 | 31 | 2 | 31 | 16 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | tech_badpromoters | * | 95.0000 | 100.0000 | 90.4762 | 48.7805 | 19 | 0 | 19 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D1_5 | tech_badpromoters | het | 88.8889 | 100.0000 | 80.0000 | 56.5217 | 8 | 0 | 8 | 2 | 0 | 0.0000 | |