PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37701-37750 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 81.6667 | 74.2424 | 90.7407 | 94.0463 | 49 | 17 | 49 | 5 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | ti | segdup | het | 99.5602 | 99.7506 | 99.3705 | 89.3230 | 12000 | 30 | 11998 | 76 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | func_cds | * | 99.9428 | 99.9771 | 99.9085 | 28.1938 | 4370 | 1 | 4369 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | func_cds | het | 99.9059 | 99.9624 | 99.8496 | 29.2819 | 2656 | 1 | 2655 | 4 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.4729 | 95.2621 | 99.7888 | 69.4023 | 945 | 47 | 945 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.7690 | 82.4242 | 98.5507 | 91.0273 | 136 | 29 | 136 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.9955 | 78.2258 | 97.9798 | 90.7216 | 97 | 27 | 97 | 2 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 80.0000 | 69.2308 | 94.7368 | 96.7185 | 18 | 8 | 18 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.4654 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7572 | 99.5298 | 99.9857 | 59.9128 | 6986 | 33 | 6983 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2056 | 98.5498 | 99.8702 | 37.4713 | 4621 | 68 | 4618 | 6 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l150_m0_e0 | het | 98.8723 | 98.6986 | 99.0466 | 80.7883 | 2806 | 37 | 2805 | 27 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m0_e0 | het | 97.8089 | 97.5524 | 98.0668 | 92.4426 | 558 | 14 | 558 | 11 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m1_e0 | het | 98.3966 | 97.8735 | 98.9253 | 88.0822 | 1749 | 38 | 1749 | 19 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e0 | het | 98.4472 | 98.0412 | 98.8565 | 88.5422 | 1902 | 38 | 1902 | 22 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | map_l250_m2_e1 | het | 98.4670 | 98.0662 | 98.8712 | 88.6090 | 1927 | 38 | 1927 | 22 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | tv | segdup | het | 99.6218 | 99.6974 | 99.5464 | 90.8847 | 5271 | 16 | 5267 | 24 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | decoy | * | 86.9565 | 100.0000 | 76.9231 | 99.9640 | 10 | 0 | 10 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | decoy | het | 80.0000 | 100.0000 | 66.6667 | 99.9708 | 6 | 0 | 6 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | func_cds | het | 95.7871 | 100.0000 | 91.9149 | 63.3385 | 214 | 0 | 216 | 19 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 76.4706 | 81.2500 | 72.2222 | 99.8592 | 13 | 3 | 13 | 5 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m0_e0 | hetalt | 92.1122 | 87.8788 | 96.7742 | 91.3649 | 29 | 4 | 30 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | hetalt | 92.7075 | 87.0968 | 99.0909 | 87.3418 | 108 | 16 | 109 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e0 | hetalt | 92.7695 | 87.2000 | 99.0991 | 88.2788 | 109 | 16 | 110 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l100_m2_e1 | hetalt | 92.3109 | 86.3636 | 99.1379 | 88.0903 | 114 | 18 | 115 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l125_m0_e0 | hetalt | 90.9091 | 90.9091 | 90.9091 | 95.4357 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | hetalt | 94.8718 | 92.5000 | 97.3684 | 93.0657 | 37 | 3 | 37 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e0 | hetalt | 93.8272 | 90.4762 | 97.4359 | 93.7500 | 38 | 4 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l125_m2_e1 | hetalt | 92.6829 | 88.3721 | 97.4359 | 93.8291 | 38 | 5 | 38 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 94.8187 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m1_e0 | hetalt | 92.6829 | 90.4762 | 95.0000 | 95.2830 | 19 | 2 | 19 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e0 | hetalt | 92.6829 | 90.4762 | 95.0000 | 95.8506 | 19 | 2 | 19 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l150_m2_e1 | hetalt | 90.9091 | 86.9565 | 95.2381 | 95.7230 | 20 | 3 | 20 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l250_m0_e0 | het | 76.5625 | 92.4528 | 65.3333 | 98.4280 | 49 | 4 | 49 | 26 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_siren | hetalt | 95.3604 | 91.4980 | 99.5633 | 86.9812 | 226 | 21 | 228 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | * | 98.7013 | 100.0000 | 97.4359 | 53.2934 | 76 | 0 | 76 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | het | 97.5000 | 100.0000 | 95.1220 | 50.6024 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | ti | segdup | het | 99.6179 | 99.7007 | 99.5352 | 89.0346 | 11994 | 36 | 11992 | 56 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | func_cds | * | 99.9314 | 99.9542 | 99.9085 | 27.9499 | 4369 | 2 | 4368 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | func_cds | het | 99.8871 | 99.9247 | 99.8495 | 28.9115 | 2655 | 2 | 2654 | 4 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2610 | 94.8589 | 99.7879 | 66.5958 | 941 | 51 | 941 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 89.4040 | 81.8182 | 98.5401 | 90.7495 | 135 | 30 | 135 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 86.4865 | 77.4194 | 97.9592 | 90.1210 | 96 | 28 | 96 | 2 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 77.2727 | 65.3846 | 94.4444 | 96.9072 | 17 | 9 | 17 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 71.4286 | 58.8235 | 90.9091 | 97.3430 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7572 | 99.5298 | 99.9857 | 59.8113 | 6986 | 33 | 6983 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.1845 | 98.5711 | 99.8055 | 37.0083 | 4622 | 67 | 4619 | 9 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4759 | 99.0435 | 99.9122 | 35.0997 | 3417 | 33 | 3414 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.2232 | 98.5968 | 99.8577 | 35.0385 | 2108 | 30 | 2105 | 3 | 0 | 0.0000 | |
| hfeng-pmm1 | SNP | tv | segdup | het | 99.6406 | 99.6785 | 99.6028 | 90.6534 | 5270 | 17 | 5266 | 21 | 0 | 0.0000 | |