PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37451-37500 / 86044 show all | |||||||||||||||
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | * | 94.8454 | 100.0000 | 90.1961 | 97.3940 | 46 | 0 | 46 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m0_e0 | het | 92.9577 | 100.0000 | 86.8421 | 97.4132 | 33 | 0 | 33 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D1_5 | segdup | het | 96.2915 | 99.7110 | 93.0988 | 95.7597 | 690 | 2 | 688 | 51 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.9133 | 100.0000 | 99.8267 | 69.4709 | 576 | 0 | 576 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8974 | 100.0000 | 99.7951 | 67.6178 | 487 | 0 | 487 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 84.8984 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | * | 95.0980 | 94.1748 | 96.0396 | 90.6481 | 97 | 6 | 97 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m0_e0 | het | 95.0820 | 96.6667 | 93.5484 | 91.2181 | 58 | 2 | 58 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m1_e0 | het | 97.2549 | 98.4127 | 96.1240 | 90.5564 | 124 | 2 | 124 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e0 | het | 96.9697 | 97.7099 | 96.2406 | 91.0377 | 128 | 3 | 128 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l100_m2_e1 | het | 97.0588 | 97.7778 | 96.3504 | 90.9631 | 132 | 3 | 132 | 5 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | * | 93.6170 | 93.6170 | 93.6170 | 93.6913 | 44 | 3 | 44 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m0_e0 | het | 93.3333 | 96.5517 | 90.3226 | 93.7500 | 28 | 1 | 28 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m1_e0 | het | 96.9231 | 98.4375 | 95.4545 | 92.5255 | 63 | 1 | 63 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e0 | het | 96.5035 | 97.1831 | 95.8333 | 92.7565 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l125_m2_e1 | het | 96.5035 | 97.1831 | 95.8333 | 92.9550 | 69 | 2 | 69 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | * | 95.3846 | 96.8750 | 93.9394 | 94.4162 | 31 | 1 | 31 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.3005 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | * | 96.5517 | 95.8904 | 97.2222 | 93.0165 | 70 | 3 | 70 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 93.8806 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | * | 96.9325 | 96.3415 | 97.5309 | 93.1646 | 79 | 3 | 79 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.8303 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | * | 96.4286 | 95.2941 | 97.5904 | 93.1800 | 81 | 4 | 81 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.8826 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 97.0690 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 96.8085 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e0 | * | 93.0233 | 90.9091 | 95.2381 | 96.9208 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e0 | het | 96.5517 | 100.0000 | 93.3333 | 96.6443 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | * | 93.0233 | 90.9091 | 95.2381 | 97.0213 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | het | 96.5517 | 100.0000 | 93.3333 | 96.7742 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_siren | het | 97.8533 | 97.8571 | 97.8495 | 88.2378 | 274 | 6 | 273 | 6 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | segdup | het | 96.7742 | 97.8261 | 95.7447 | 96.0338 | 90 | 2 | 90 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.2565 | 96.8421 | 97.6744 | 90.7527 | 92 | 3 | 84 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0826 | 100.0000 | 98.1818 | 88.6831 | 108 | 0 | 108 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.4615 | 100.0000 | 96.9697 | 88.5017 | 66 | 0 | 64 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.9094 | 96.7480 | 99.0991 | 88.2228 | 238 | 8 | 220 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 95.8314 | 95.7447 | 95.9184 | 80.7087 | 45 | 2 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.2812 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 88.8889 | 100.0000 | 80.0000 | 90.1961 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | * | 91.6667 | 100.0000 | 84.6154 | 93.0108 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 93.3333 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 93.1818 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | * | 90.5660 | 92.3077 | 88.8889 | 93.8215 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | het | 91.8919 | 94.4444 | 89.4737 | 93.6242 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m1_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 94.6903 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | * | 88.8889 | 92.3077 | 85.7143 | 94.7269 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 94.6328 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 83.3333 | 100.0000 | 71.4286 | 95.1724 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | * | 88.8889 | 92.3077 | 85.7143 | 94.7955 | 24 | 2 | 24 | 4 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 94.7075 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |