PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3701-3750 / 86044 show all | |||||||||||||||
| bgallagher-sentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7825 | 99.6169 | 99.9487 | 75.9091 | 3900 | 15 | 3900 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7826 | 99.6527 | 99.9129 | 62.6693 | 3443 | 12 | 3443 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9343 | 99.9343 | 99.9343 | 54.3868 | 6084 | 4 | 6084 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9629 | 99.9555 | 99.9703 | 35.1476 | 6742 | 3 | 6742 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9452 | 99.9270 | 99.9635 | 30.8140 | 2736 | 2 | 2736 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | * | segdup | homalt | 99.8883 | 99.8697 | 99.9069 | 88.1168 | 10729 | 14 | 10729 | 10 | 10 | 100.0000 | |
| bgallagher-sentieon | SNP | * | tech_badpromoters | * | 98.0769 | 97.4522 | 98.7097 | 49.3464 | 153 | 4 | 153 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | * | tech_badpromoters | homalt | 98.1366 | 98.7500 | 97.5309 | 47.0588 | 79 | 1 | 79 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | HG002complexvar | homalt | 99.9695 | 99.9514 | 99.9876 | 18.3190 | 193369 | 94 | 193359 | 24 | 24 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | HG002compoundhet | homalt | 99.9053 | 99.9189 | 99.8918 | 30.4822 | 7388 | 6 | 7388 | 8 | 8 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9456 | 99.9406 | 99.9505 | 49.3379 | 10096 | 6 | 10096 | 5 | 5 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 98.3982 | 97.2851 | 99.5370 | 91.0596 | 215 | 6 | 215 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 98.6755 | 98.0263 | 99.3333 | 91.3594 | 149 | 3 | 149 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.2072 | 98.6486 | 99.7722 | 84.5803 | 438 | 6 | 438 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4764 | 99.2167 | 99.7375 | 83.4131 | 380 | 3 | 380 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7720 | 99.5863 | 99.9585 | 72.8523 | 2407 | 10 | 2407 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.8222 | 99.7630 | 99.8814 | 64.1429 | 1684 | 4 | 1684 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9319 | 99.9546 | 99.9092 | 41.9151 | 2200 | 1 | 2200 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | * | 93.8776 | 91.0891 | 96.8421 | 93.5065 | 92 | 9 | 92 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.6565 | 93.9394 | 95.3846 | 93.7440 | 62 | 4 | 62 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.9650 | 100.0000 | 99.9300 | 26.9939 | 1427 | 0 | 1427 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | segdup | homalt | 99.9000 | 99.8534 | 99.9467 | 87.4231 | 7494 | 11 | 7494 | 4 | 4 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | tech_badpromoters | * | 98.2249 | 97.6471 | 98.8095 | 45.0980 | 83 | 2 | 83 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 99.9009 | 99.8514 | 99.9504 | 61.6260 | 10082 | 15 | 10082 | 5 | 5 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 99.7876 | 99.6312 | 99.9445 | 71.5069 | 5403 | 20 | 5403 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 99.4059 | 99.0138 | 99.8012 | 86.2868 | 502 | 5 | 502 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 99.4462 | 99.3676 | 99.5249 | 88.0409 | 1257 | 8 | 1257 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 99.4336 | 99.4962 | 99.3711 | 89.1468 | 790 | 4 | 790 | 5 | 5 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 99.4652 | 99.1471 | 99.7854 | 85.5145 | 465 | 4 | 465 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.7995 | 99.6662 | 99.9331 | 79.6097 | 1493 | 5 | 1493 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 99.7876 | 99.6312 | 99.9445 | 71.5069 | 5403 | 20 | 5403 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | homalt | 99.7448 | 99.5473 | 99.9432 | 61.1393 | 1759 | 8 | 1759 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.9357 | 99.9228 | 99.9485 | 59.3344 | 3884 | 3 | 3884 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.9275 | 99.9275 | 99.9275 | 36.2312 | 2756 | 2 | 2756 | 2 | 2 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | segdup | homalt | 99.8611 | 99.9074 | 99.8149 | 89.4615 | 3235 | 3 | 3235 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | tech_badpromoters | * | 97.9021 | 97.2222 | 98.5915 | 53.5948 | 70 | 2 | 70 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | SNP | tv | tech_badpromoters | homalt | 97.4359 | 97.4359 | 97.4359 | 51.8519 | 38 | 1 | 38 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | func_cds | homalt | 99.5575 | 99.5575 | 99.5575 | 33.1361 | 225 | 1 | 225 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 90.1186 | 85.7143 | 95.0000 | 99.9602 | 18 | 3 | 19 | 1 | 1 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.4894 | 99.5224 | 99.4565 | 52.2754 | 6043 | 29 | 6039 | 33 | 33 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.6976 | 99.5818 | 99.8136 | 41.7639 | 2143 | 9 | 2142 | 4 | 4 | 100.0000 | |
| cchapple-custom | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 94.0000 | 100.0000 | 88.6792 | 36.1446 | 47 | 0 | 47 | 6 | 6 | 100.0000 | |
| cchapple-custom | INDEL | * | map_l150_m0_e0 | homalt | 96.9136 | 95.7317 | 98.1250 | 90.5716 | 157 | 7 | 157 | 3 | 3 | 100.0000 | |
| cchapple-custom | INDEL | * | segdup | homalt | 99.5843 | 99.8958 | 99.2746 | 93.0445 | 959 | 1 | 958 | 7 | 7 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | homalt | 98.8310 | 97.7918 | 99.8926 | 85.6659 | 930 | 21 | 930 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 98.1132 | 96.6216 | 99.6516 | 87.6280 | 2288 | 80 | 2288 | 8 | 8 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 97.6447 | 95.8388 | 99.5199 | 88.8259 | 1451 | 63 | 1451 | 7 | 7 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 98.9336 | 98.0047 | 99.8804 | 84.7751 | 835 | 17 | 835 | 1 | 1 | 100.0000 | |
| astatham-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | homalt | 99.6156 | 99.2848 | 99.9486 | 75.9210 | 3887 | 28 | 3887 | 2 | 2 | 100.0000 | |