PrecisionFDA
Truth Challenge

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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
3701-3750 / 86044 show all
bgallagher-sentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7825
99.6169
99.9487
75.9091
390015390022
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7826
99.6527
99.9129
62.6693
344312344333
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9343
99.9343
99.9343
54.3868
60844608444
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9629
99.9555
99.9703
35.1476
67423674222
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
bgallagher-sentieonSNP*segduphomalt
99.8883
99.8697
99.9069
88.1168
1072914107291010
100.0000
bgallagher-sentieonSNP*tech_badpromoters*
98.0769
97.4522
98.7097
49.3464
153415322
100.0000
bgallagher-sentieonSNP*tech_badpromotershomalt
98.1366
98.7500
97.5309
47.0588
7917922
100.0000
bgallagher-sentieonSNPtiHG002complexvarhomalt
99.9695
99.9514
99.9876
18.3190
193369941933592424
100.0000
bgallagher-sentieonSNPtiHG002compoundhethomalt
99.9053
99.9189
99.8918
30.4822
73886738888
100.0000
bgallagher-sentieonSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9456
99.9406
99.9505
49.3379
1009661009655
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged*
98.3982
97.2851
99.5370
91.0596
215621511
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhet
98.6755
98.0263
99.3333
91.3594
149314911
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.2072
98.6486
99.7722
84.5803
438643811
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4764
99.2167
99.7375
83.4131
380338011
100.0000
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7720
99.5863
99.9585
72.8523
240710240711
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_diTR_11to50homalt
99.8222
99.7630
99.8814
64.1429
16844168422
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9319
99.9546
99.9092
41.9151
22001220022
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200*
93.8776
91.0891
96.8421
93.5065
9299233
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_quadTR_51to200het
94.6565
93.9394
95.3846
93.7440
6246233
100.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9650
100.0000
99.9300
26.9939
14270142711
100.0000
bgallagher-sentieonSNPtisegduphomalt
99.9000
99.8534
99.9467
87.4231
749411749444
100.0000
bgallagher-sentieonSNPtitech_badpromoters*
98.2249
97.6471
98.8095
45.0980
8328311
100.0000
bgallagher-sentieonSNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
41.6667
4104111
100.0000
bgallagher-sentieonSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9009
99.8514
99.9504
61.6260
10082151008255
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7876
99.6312
99.9445
71.5069
540320540333
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
99.4059
99.0138
99.8012
86.2868
502550211
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4462
99.3676
99.5249
88.0409
12578125766
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4336
99.4962
99.3711
89.1468
790479055
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.4652
99.1471
99.7854
85.5145
465446511
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7995
99.6662
99.9331
79.6097
14935149311
100.0000
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7876
99.6312
99.9445
71.5069
540320540333
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_diTR_11to50homalt
99.7448
99.5473
99.9432
61.1393
17598175911
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.2312
27562275622
100.0000
bgallagher-sentieonSNPtvsegduphomalt
99.8611
99.9074
99.8149
89.4615
32353323566
100.0000
bgallagher-sentieonSNPtvtech_badpromoters*
97.9021
97.2222
98.5915
53.5948
7027011
100.0000
bgallagher-sentieonSNPtvtech_badpromotershomalt
97.4359
97.4359
97.4359
51.8519
3813811
100.0000
cchapple-customINDEL*func_cdshomalt
99.5575
99.5575
99.5575
33.1361
225122511
100.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_homopolymer_gt10homalt
90.1186
85.7143
95.0000
99.9602
1831911
100.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.4894
99.5224
99.4565
52.2754
60432960393333
100.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.6976
99.5818
99.8136
41.7639
21439214244
100.0000
cchapple-customINDEL*lowcmp_SimpleRepeat_triTR_51to200homalt
94.0000
100.0000
88.6792
36.1446
4704766
100.0000
cchapple-customINDEL*map_l150_m0_e0homalt
96.9136
95.7317
98.1250
90.5716
157715733
100.0000
cchapple-customINDEL*segduphomalt
99.5843
99.8958
99.2746
93.0445
959195877
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.8310
97.7918
99.8926
85.6659
9302193011
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
98.1132
96.6216
99.6516
87.6280
228880228888
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
97.6447
95.8388
99.5199
88.8259
145163145177
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.9336
98.0047
99.8804
84.7751
8351783511
100.0000
astatham-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.6156
99.2848
99.9486
75.9210
388728388722
100.0000