PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
37101-37150 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 96.1564 | 94.7368 | 97.6190 | 90.9968 | 90 | 5 | 82 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6744 | 97.2222 | 98.1308 | 89.4789 | 105 | 3 | 105 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9223 | 96.9697 | 96.8750 | 89.3864 | 64 | 2 | 62 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 93.3333 | 93.3333 | 93.3333 | 88.0952 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | * | 95.6522 | 100.0000 | 91.6667 | 97.0732 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m0_e0 | het | 94.1176 | 100.0000 | 88.8889 | 96.0177 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | * | 94.1176 | 92.3077 | 96.0000 | 96.2179 | 24 | 2 | 24 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m1_e0 | het | 94.4444 | 94.4444 | 94.4444 | 95.2756 | 17 | 1 | 17 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | * | 90.5660 | 92.3077 | 88.8889 | 96.4333 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | het | 91.8919 | 94.4444 | 89.4737 | 95.6522 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e0 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8648 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | * | 90.5660 | 92.3077 | 88.8889 | 96.4520 | 24 | 2 | 24 | 3 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | het | 91.8919 | 94.4444 | 89.4737 | 95.6720 | 17 | 1 | 17 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l100_m2_e1 | homalt | 90.9091 | 100.0000 | 83.3333 | 97.8723 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | * | 92.3077 | 100.0000 | 85.7143 | 97.9472 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m0_e0 | het | 85.7143 | 100.0000 | 75.0000 | 97.7901 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | * | 93.3333 | 93.3333 | 93.3333 | 97.1042 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m1_e0 | het | 94.7368 | 100.0000 | 90.0000 | 96.5517 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | * | 90.3226 | 93.3333 | 87.5000 | 97.2556 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | het | 94.7368 | 100.0000 | 90.0000 | 97.0238 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e0 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.1900 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | * | 90.3226 | 93.3333 | 87.5000 | 97.2603 | 14 | 1 | 14 | 2 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | het | 94.7368 | 100.0000 | 90.0000 | 97.0326 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l125_m2_e1 | homalt | 85.7143 | 100.0000 | 75.0000 | 98.1900 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | * | 88.8889 | 100.0000 | 80.0000 | 98.3108 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m0_e0 | het | 80.0000 | 100.0000 | 66.6667 | 98.0892 | 2 | 0 | 2 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.4654 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m1_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.0833 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | * | 90.9091 | 90.9091 | 90.9091 | 97.6891 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e0 | het | 92.3077 | 100.0000 | 85.7143 | 97.4074 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | * | 90.9091 | 90.9091 | 90.9091 | 97.6987 | 10 | 1 | 10 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l150_m2_e1 | het | 92.3077 | 100.0000 | 85.7143 | 97.4170 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.4565 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 98.9130 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| ckim-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3333 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m1_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.7805 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.3827 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 98.8764 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 99.4012 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 98.9130 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | * | 96.5778 | 97.6744 | 95.5056 | 93.0031 | 84 | 2 | 85 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | map_siren | het | 95.0495 | 97.9592 | 92.3077 | 92.5926 | 48 | 1 | 48 | 4 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | * | 97.8723 | 97.8723 | 97.8723 | 96.4635 | 46 | 1 | 46 | 1 | 0 | 0.0000 | |
| ckim-gatk | INDEL | I16_PLUS | segdup | homalt | 97.4359 | 100.0000 | 95.0000 | 94.7917 | 19 | 0 | 19 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | * | 91.4851 | 91.6667 | 91.3043 | 97.8281 | 22 | 2 | 21 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m0_e0 | het | 86.1878 | 86.6667 | 85.7143 | 98.1912 | 13 | 2 | 12 | 2 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | het | 90.5983 | 88.3333 | 92.9825 | 96.4574 | 53 | 7 | 53 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | het | 91.4729 | 89.3939 | 93.6508 | 96.7102 | 59 | 7 | 59 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | het | 91.4729 | 89.3939 | 93.6508 | 96.8117 | 59 | 7 | 59 | 4 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | segdup | het | 99.1750 | 98.6989 | 99.6558 | 95.3303 | 531 | 7 | 579 | 2 | 0 | 0.0000 | |