PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36801-36850 / 86044 show all | |||||||||||||||
| gduggal-bwafb | SNP | tv | func_cds | het | 99.1412 | 99.9247 | 98.3698 | 41.4914 | 2655 | 2 | 2655 | 44 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6180 | 99.4911 | 99.7452 | 67.3461 | 782 | 4 | 783 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.4278 | 99.2381 | 99.6183 | 71.9185 | 521 | 4 | 522 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.7500 | 64.7059 | 73.3333 | 97.4576 | 11 | 6 | 11 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 83.3333 | 83.3333 | 83.3333 | 95.0413 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 96.5517 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.5882 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | tech_badpromoters | * | 97.2973 | 100.0000 | 94.7368 | 62.5616 | 72 | 0 | 72 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | tech_badpromoters | het | 94.2857 | 100.0000 | 89.1892 | 66.6667 | 33 | 0 | 33 | 4 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 76.1905 | 66.6667 | 88.8889 | 99.7817 | 8 | 4 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 71.4286 | 58.8235 | 90.9091 | 99.7884 | 10 | 7 | 10 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 77.7778 | 70.0000 | 87.5000 | 99.7959 | 7 | 3 | 7 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 35.0893 | 21.7742 | 90.3226 | 99.9815 | 27 | 97 | 28 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 31.7757 | 19.5402 | 85.0000 | 99.9795 | 17 | 70 | 17 | 3 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l100_m0_e0 | homalt | 67.5325 | 51.0806 | 99.6169 | 90.9281 | 260 | 249 | 260 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | * | 66.9676 | 50.4535 | 99.5526 | 96.3322 | 445 | 437 | 445 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | * | map_l125_m0_e0 | het | 68.5268 | 52.2998 | 99.3528 | 96.8009 | 307 | 280 | 307 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C1_5 | map_l250_m0_e0 | * | 0.0000 | 0.0000 | 99.1477 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C1_5 | map_l250_m0_e0 | het | 0.0000 | 0.0000 | 99.0260 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 45.4545 | 97.8218 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 45.4545 | 97.6744 | 0 | 0 | 5 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.5915 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 98.5075 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 66.6667 | 93.5252 | 0 | 0 | 12 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 50.0000 | 94.7826 | 0 | 0 | 6 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 70.5882 | 91.2371 | 0 | 0 | 12 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 54.5455 | 92.8571 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 71.4286 | 97.3282 | 0 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 71.4286 | 97.1429 | 0 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 0.0000 | 33.3333 | 94.9721 | 0 | 0 | 3 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 0.0000 | 25.0000 | 94.7712 | 0 | 0 | 2 | 6 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 0.0000 | 0.0000 | 97.2727 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 0.0000 | 0.0000 | 97.0588 | 0 | 0 | 0 | 3 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l100_m0_e0 | * | 0.0000 | 0.0000 | 42.8571 | 96.0452 | 0 | 0 | 3 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m0_e0 | het | 0.0000 | 0.0000 | 20.0000 | 96.8944 | 0 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 54.5455 | 96.2963 | 0 | 0 | 6 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 37.5000 | 96.9925 | 0 | 0 | 3 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 58.3333 | 96.3526 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 44.4444 | 96.9595 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 58.3333 | 96.4706 | 0 | 0 | 7 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 44.4444 | 97.0588 | 0 | 0 | 4 | 5 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | * | 0.0000 | 0.0000 | 99.2366 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m0_e0 | het | 0.0000 | 0.0000 | 99.1935 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m1_e0 | * | 0.0000 | 0.0000 | 33.3333 | 97.2222 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m1_e0 | het | 0.0000 | 0.0000 | 97.9592 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 33.3333 | 97.5207 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e0 | het | 0.0000 | 0.0000 | 98.1900 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 33.3333 | 97.6000 | 0 | 0 | 2 | 4 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | C6_15 | map_l125_m2_e1 | het | 0.0000 | 0.0000 | 98.2301 | 0 | 0 | 0 | 4 | 0 | 0.0000 | ||
| gduggal-bwavard | INDEL | C6_15 | map_l150_m0_e0 | * | 0.0000 | 0.0000 | 99.0991 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||