PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36751-36800 / 86044 show all | |||||||||||||||
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | * | 94.5055 | 93.4783 | 95.5556 | 97.5179 | 43 | 3 | 43 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m0_e0 | het | 92.3077 | 90.9091 | 93.7500 | 97.0936 | 30 | 3 | 30 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | * | 97.6471 | 97.0760 | 98.2249 | 95.1297 | 166 | 5 | 166 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m1_e0 | het | 96.8326 | 96.3964 | 97.2727 | 94.8526 | 107 | 4 | 107 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | * | 97.8142 | 97.2826 | 98.3516 | 95.3737 | 179 | 5 | 179 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e0 | het | 97.0954 | 96.6942 | 97.5000 | 95.0556 | 117 | 4 | 117 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | * | 97.8261 | 97.2973 | 98.3607 | 95.4602 | 180 | 5 | 180 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | map_l250_m2_e1 | het | 97.1193 | 96.7213 | 97.5207 | 95.1210 | 118 | 4 | 118 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D1_5 | segdup | het | 98.9321 | 98.5549 | 99.3122 | 94.6465 | 682 | 10 | 722 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l100_m0_e0 | het | 92.7976 | 90.0000 | 95.7746 | 84.8614 | 54 | 6 | 68 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m0_e0 | het | 93.2102 | 89.6552 | 97.0588 | 89.8204 | 26 | 3 | 33 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m1_e0 | het | 94.7694 | 92.1875 | 97.5000 | 85.8156 | 59 | 5 | 78 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e0 | het | 94.5127 | 91.5493 | 97.6744 | 86.4139 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l125_m2_e1 | het | 94.5127 | 91.5493 | 97.6744 | 86.6460 | 65 | 6 | 84 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m0_e0 | het | 95.6438 | 95.0000 | 96.2963 | 89.8496 | 19 | 1 | 26 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m1_e0 | het | 96.3702 | 94.8718 | 97.9167 | 89.0411 | 37 | 2 | 47 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e0 | het | 95.7563 | 93.4783 | 98.1481 | 89.2000 | 43 | 3 | 53 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l150_m2_e1 | het | 95.8451 | 93.6170 | 98.1818 | 89.2578 | 44 | 3 | 54 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | * | 83.3333 | 83.3333 | 83.3333 | 97.6471 | 5 | 1 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m0_e0 | het | 88.8889 | 100.0000 | 80.0000 | 95.9677 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | * | 91.4286 | 88.8889 | 94.1176 | 96.2306 | 16 | 2 | 16 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m1_e0 | het | 96.0000 | 100.0000 | 92.3077 | 94.6281 | 11 | 0 | 12 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | * | 93.0233 | 90.9091 | 95.2381 | 95.9615 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e0 | het | 96.7742 | 100.0000 | 93.7500 | 94.4251 | 14 | 0 | 15 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e1 | * | 93.0233 | 90.9091 | 95.2381 | 96.0452 | 20 | 2 | 20 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | D6_15 | map_l250_m2_e1 | het | 96.7742 | 100.0000 | 93.7500 | 94.5392 | 14 | 0 | 15 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 0.0000 | 80.0000 | 0 | 4 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 50.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwafb | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.1429 | 66.6667 | 50.0000 | 95.6522 | 18 | 9 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m0_e0 | het | 96.2284 | 93.8650 | 98.7138 | 84.8956 | 306 | 20 | 307 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m0_e0 | het | 95.9569 | 92.7083 | 99.4413 | 88.6493 | 178 | 14 | 178 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m0_e0 | het | 95.0980 | 91.5094 | 98.9796 | 92.1222 | 97 | 9 | 97 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m0_e0 | * | 95.8333 | 95.8333 | 95.8333 | 97.8082 | 23 | 1 | 23 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m0_e0 | het | 93.3333 | 93.3333 | 93.3333 | 97.7941 | 14 | 1 | 14 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m1_e0 | het | 92.0354 | 86.6667 | 98.1132 | 96.1398 | 52 | 8 | 52 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e0 | het | 92.8000 | 87.8788 | 98.3051 | 96.3286 | 58 | 8 | 58 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l250_m2_e1 | het | 92.8000 | 87.8788 | 98.3051 | 96.4393 | 58 | 8 | 58 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.7199 | 99.5649 | 99.8753 | 57.4423 | 1602 | 7 | 1602 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6440 | 99.4227 | 99.8662 | 57.6502 | 2239 | 13 | 2239 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5652 | 99.3492 | 99.7821 | 62.0766 | 1374 | 9 | 1374 | 3 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 88.8889 | 100.0000 | 80.0000 | 97.1989 | 9 | 0 | 8 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 85.7143 | 100.0000 | 75.0000 | 97.3422 | 7 | 0 | 6 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | * | 98.4326 | 100.0000 | 96.9136 | 57.8125 | 157 | 0 | 157 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | * | tech_badpromoters | het | 96.8553 | 100.0000 | 93.9024 | 62.0370 | 77 | 0 | 77 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.6893 | 99.5567 | 99.8222 | 56.6808 | 1123 | 5 | 1123 | 2 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6580 | 99.3861 | 99.9314 | 49.5848 | 1457 | 9 | 1456 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.6495 | 99.4172 | 99.8828 | 51.6714 | 853 | 5 | 852 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | tech_badpromoters | * | 99.4152 | 100.0000 | 98.8372 | 52.4862 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | ti | tech_badpromoters | het | 98.8764 | 100.0000 | 97.7778 | 57.1429 | 44 | 0 | 44 | 1 | 0 | 0.0000 | |
| gduggal-bwafb | SNP | tv | func_cds | * | 99.4763 | 99.9542 | 99.0029 | 37.0021 | 4369 | 2 | 4369 | 44 | 0 | 0.0000 | |