PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36651-36700 / 86044 show all | |||||||||||||||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | het | 48.4848 | 33.3333 | 88.8889 | 88.3117 | 8 | 16 | 8 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | * | 72.3926 | 57.2816 | 98.3333 | 96.0186 | 59 | 44 | 59 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | map_l100_m0_e0 | het | 74.2268 | 60.0000 | 97.2973 | 96.7965 | 36 | 24 | 36 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | D6_15 | segdup | het | 87.4251 | 79.3478 | 97.3333 | 97.4507 | 73 | 19 | 73 | 2 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 97.3684 | 0 | 1 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 35.7143 | 22.5564 | 85.7143 | 93.7500 | 30 | 103 | 30 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 39.1304 | 25.4717 | 84.3750 | 92.8731 | 27 | 79 | 27 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 37.0130 | 23.1707 | 91.9355 | 92.3551 | 57 | 189 | 57 | 5 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | * | 33.3333 | 25.0000 | 50.0000 | 87.5000 | 1 | 3 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 0.0000 | 0.0000 | 66.6667 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 98.2818 | 6 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | het | 97.4777 | 98.9293 | 96.0680 | 94.6040 | 924 | 10 | 904 | 37 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9987 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | segdupwithalt | het | 0.0000 | 0.0000 | 99.9990 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | ti | tech_badpromoters | * | 88.8889 | 100.0000 | 80.0000 | 62.3656 | 85 | 0 | 84 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | het | 80.3738 | 100.0000 | 67.1875 | 68.6275 | 44 | 0 | 43 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | func_cds | * | 94.7737 | 99.9771 | 90.0850 | 32.1750 | 4370 | 1 | 4343 | 478 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | func_cds | het | 91.6856 | 99.9624 | 84.6746 | 34.5435 | 2656 | 1 | 2641 | 478 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.6073 | 99.7455 | 99.4695 | 62.0342 | 784 | 2 | 750 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.5100 | 99.6190 | 99.4012 | 66.6667 | 523 | 2 | 498 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 49.4845 | 61.5385 | 41.3793 | 93.1765 | 16 | 10 | 12 | 17 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 45.4277 | 64.7059 | 35.0000 | 94.0828 | 11 | 6 | 7 | 13 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 55.5556 | 55.5556 | 55.5556 | 87.3239 | 5 | 4 | 5 | 4 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 99.9907 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 99.9674 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | het | 79.8611 | 83.3333 | 76.6667 | 90.0332 | 30 | 6 | 23 | 7 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 94.5455 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 92.8571 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 74.1036 | 16 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | hetalt | 98.7342 | 100.0000 | 97.5000 | 78.2609 | 9 | 0 | 39 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | hetalt | 99.4872 | 100.0000 | 98.9796 | 72.3944 | 30 | 0 | 97 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | hetalt | 99.5349 | 100.0000 | 99.0741 | 73.5941 | 30 | 0 | 107 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | hetalt | 99.5392 | 100.0000 | 99.0826 | 73.6715 | 30 | 0 | 108 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | hetalt | 98.0392 | 100.0000 | 96.1538 | 81.9444 | 3 | 0 | 25 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 76.1905 | 20 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 77.3885 | 20 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | hetalt | 99.3103 | 100.0000 | 98.6301 | 77.1875 | 20 | 0 | 72 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 66.6667 | 95.7746 | 0 | 0 | 2 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | hetalt | 96.7742 | 100.0000 | 93.7500 | 88.5714 | 4 | 0 | 15 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | hetalt | 97.4359 | 100.0000 | 95.0000 | 87.7301 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | hetalt | 97.4359 | 100.0000 | 95.0000 | 88.0952 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | * | 78.6517 | 100.0000 | 64.8148 | 71.8750 | 72 | 0 | 70 | 38 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | het | 63.4615 | 100.0000 | 46.4789 | 76.6447 | 33 | 0 | 33 | 38 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l125_m0_e0 | het | 95.7648 | 94.0375 | 97.5567 | 88.0025 | 552 | 35 | 559 | 14 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | het | 94.9769 | 93.5484 | 96.4497 | 90.9601 | 319 | 22 | 326 | 12 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | * | 94.1935 | 93.5897 | 94.8052 | 97.6388 | 73 | 5 | 73 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m0_e0 | het | 92.4528 | 92.4528 | 92.4528 | 97.3042 | 49 | 4 | 49 | 4 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m1_e0 | het | 94.6019 | 92.1053 | 97.2376 | 95.3423 | 175 | 15 | 176 | 5 | 0 | 0.0000 | |
| gduggal-bwafb | INDEL | * | map_l250_m2_e0 | het | 95.1279 | 92.8571 | 97.5124 | 95.5003 | 195 | 15 | 196 | 5 | 0 | 0.0000 | |