PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
36451-36500 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.9231 | 100.0000 | 62.5000 | 97.5904 | 7 | 0 | 5 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | hetalt | 99.6016 | 100.0000 | 99.2063 | 70.4918 | 16 | 0 | 125 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 76.4120 | 9 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | hetalt | 99.7260 | 100.0000 | 99.4536 | 69.3980 | 30 | 0 | 182 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | hetalt | 99.7442 | 100.0000 | 99.4898 | 71.2188 | 30 | 0 | 195 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | hetalt | 99.7481 | 100.0000 | 99.4975 | 71.0756 | 30 | 0 | 198 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | hetalt | 98.9474 | 100.0000 | 97.9167 | 79.8319 | 3 | 0 | 47 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | hetalt | 99.5781 | 100.0000 | 99.1597 | 73.6142 | 20 | 0 | 118 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | hetalt | 99.6078 | 100.0000 | 99.2188 | 75.1456 | 20 | 0 | 127 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | hetalt | 99.6139 | 100.0000 | 99.2308 | 75.0480 | 20 | 0 | 129 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m0_e0 | hetalt | 0.0000 | 0.0000 | 85.7143 | 93.5185 | 0 | 0 | 6 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | hetalt | 98.1132 | 100.0000 | 96.2963 | 87.5000 | 4 | 0 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | hetalt | 98.3607 | 100.0000 | 96.7742 | 88.0309 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | segdupwithalt | * | 0.0000 | 0.0000 | 50.0000 | 99.9991 | 0 | 0 | 1 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | segdupwithalt | het | 0.0000 | 0.0000 | 99.9994 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| eyeh-varpipe | SNP | * | tech_badpromoters | * | 83.8356 | 100.0000 | 72.1698 | 67.3846 | 157 | 0 | 153 | 59 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | tech_badpromoters | het | 72.0379 | 100.0000 | 56.2963 | 72.9459 | 77 | 0 | 76 | 59 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 44.4444 | 50.0000 | 40.0000 | 96.7213 | 5 | 5 | 4 | 6 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.4127 | 100.0000 | 96.8750 | 65.5914 | 2 | 0 | 31 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 0.0000 | 33.3333 | 99.9533 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 0.0000 | 0.0000 | 33.3333 | 99.8458 | 0 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.7414 | 97.6021 | 99.9075 | 50.0923 | 2198 | 54 | 2161 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.0508 | 98.2646 | 99.8497 | 54.9729 | 1359 | 24 | 1329 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 68.3544 | 64.2857 | 72.9730 | 97.1820 | 27 | 15 | 27 | 10 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 57.6923 | 55.5556 | 60.0000 | 97.8032 | 15 | 12 | 15 | 10 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 80.0000 | 100.0000 | 66.6667 | 97.4860 | 9 | 0 | 6 | 3 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 83.3333 | 100.0000 | 71.4286 | 97.7636 | 7 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 95.5556 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.6524 | 97.4079 | 99.9291 | 42.5020 | 1428 | 38 | 1410 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.1183 | 98.3683 | 99.8798 | 44.5703 | 844 | 14 | 831 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 57.1429 | 62.5000 | 52.6316 | 97.1168 | 10 | 6 | 10 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 41.6667 | 50.0000 | 35.7143 | 97.5567 | 5 | 5 | 5 | 9 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 90.9091 | 100.0000 | 83.3333 | 97.8947 | 8 | 0 | 5 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 66.6667 | 100.0000 | 50.0000 | 94.1176 | 2 | 0 | 1 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 98.9070 | 97.9644 | 99.8679 | 59.9259 | 770 | 16 | 756 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 98.9411 | 98.0952 | 99.8016 | 65.5738 | 515 | 10 | 503 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | * | 75.5556 | 65.3846 | 89.4737 | 97.1386 | 17 | 9 | 17 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | het | 68.9655 | 58.8235 | 83.3333 | 97.9130 | 10 | 7 | 10 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 95.9459 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 95.2381 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | * | 91.8292 | 86.1111 | 98.3607 | 51.2000 | 62 | 10 | 60 | 1 | 0 | 0.0000 | |
| gduggal-bwavard | SNP | tv | tech_badpromoters | het | 90.3226 | 84.8485 | 96.5517 | 55.3846 | 28 | 5 | 28 | 1 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e0 | hetalt | 54.5455 | 50.0000 | 60.0000 | 97.3404 | 3 | 3 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | map_l250_m2_e1 | hetalt | 54.5455 | 50.0000 | 60.0000 | 97.3958 | 3 | 3 | 3 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | * | tech_badpromoters | het | 66.4537 | 61.5385 | 72.2222 | 55.0000 | 24 | 15 | 26 | 10 | 0 | 0.0000 | |
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 74.1935 | 0 | 0 | 0 | 8 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 69.5652 | 0 | 0 | 0 | 7 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 0.0000 | 75.0000 | 0 | 0 | 0 | 1 | 0 | 0.0000 | ||
| gduggal-snapfb | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 0.0000 | 84.6154 | 0 | 0 | 0 | 2 | 0 | 0.0000 | ||