PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35651-35700 / 86044 show all | |||||||||||||||
| hfeng-pmm3 | SNP | * | map_l150_m0_e0 | het | 98.9660 | 98.8665 | 99.0658 | 81.0107 | 7850 | 90 | 7847 | 74 | 2 | 2.7027 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | het | 97.4585 | 96.8557 | 98.0689 | 89.2184 | 1879 | 61 | 1879 | 37 | 1 | 2.7027 | |
| qzeng-custom | INDEL | I6_15 | map_siren | homalt | 77.8370 | 87.7778 | 69.9187 | 73.1441 | 79 | 11 | 86 | 37 | 1 | 2.7027 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.7965 | 99.5102 | 98.0929 | 39.5838 | 11377 | 56 | 11419 | 222 | 6 | 2.7027 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.5296 | 98.8181 | 98.2427 | 79.9696 | 4097 | 49 | 4137 | 74 | 2 | 2.7027 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 98.0022 | 98.7524 | 97.2633 | 81.0644 | 2612 | 33 | 2630 | 74 | 2 | 2.7027 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | het | 97.2776 | 99.5499 | 95.1068 | 80.0626 | 12607 | 57 | 12245 | 630 | 17 | 2.6984 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 41.4402 | 94.0217 | 26.5770 | 81.1312 | 1038 | 66 | 1087 | 3003 | 81 | 2.6973 | |
| gduggal-snapplat | INDEL | I6_15 | * | het | 35.6936 | 25.4959 | 59.4871 | 60.4118 | 2558 | 7475 | 2505 | 1706 | 46 | 2.6964 | |
| raldana-dualsentieon | SNP | tv | * | het | 99.8532 | 99.8447 | 99.8617 | 22.1748 | 590777 | 919 | 590703 | 818 | 22 | 2.6895 | |
| ciseli-custom | SNP | tv | func_cds | * | 95.2555 | 99.4738 | 91.3804 | 30.2616 | 4348 | 23 | 4336 | 409 | 11 | 2.6895 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 73.1099 | 94.8597 | 59.4736 | 81.1920 | 13822 | 749 | 13965 | 9516 | 255 | 2.6797 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 73.1099 | 94.8597 | 59.4736 | 81.1920 | 13822 | 749 | 13965 | 9516 | 255 | 2.6797 | |
| ciseli-custom | SNP | * | segdup | het | 95.5747 | 98.0713 | 93.2020 | 92.0353 | 16983 | 334 | 16891 | 1232 | 33 | 2.6786 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 95.9908 | 99.7206 | 92.5300 | 66.9362 | 4283 | 12 | 4162 | 336 | 9 | 2.6786 | |
| ciseli-custom | SNP | * | HG002compoundhet | het | 65.9081 | 78.7276 | 56.6789 | 49.8597 | 11162 | 3016 | 11240 | 8591 | 230 | 2.6772 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | het | 91.4492 | 87.0444 | 96.3236 | 84.5266 | 13733 | 2044 | 13729 | 524 | 14 | 2.6718 | |
| jmaeng-gatk | SNP | tv | * | * | 99.5370 | 99.3842 | 99.6902 | 27.5023 | 963719 | 5971 | 963632 | 2995 | 80 | 2.6711 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | het | 91.5298 | 87.1628 | 96.3575 | 84.5264 | 13892 | 2046 | 13888 | 525 | 14 | 2.6667 | |
| ghariani-varprowl | SNP | ti | func_cds | het | 99.5080 | 99.8942 | 99.1249 | 31.7349 | 8495 | 9 | 8495 | 75 | 2 | 2.6667 | |
| ckim-vqsr | SNP | ti | map_l125_m1_e0 | * | 70.1902 | 54.3480 | 99.0678 | 87.5048 | 15943 | 13392 | 15941 | 150 | 4 | 2.6667 | |
| jlack-gatk | SNP | tv | * | * | 99.5956 | 99.9388 | 99.2547 | 27.4223 | 969097 | 593 | 969008 | 7276 | 194 | 2.6663 | |
| ciseli-custom | SNP | ti | map_l100_m2_e0 | het | 83.2254 | 78.7865 | 88.1944 | 75.0570 | 24126 | 6496 | 24100 | 3226 | 86 | 2.6658 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | het | 84.1017 | 75.1633 | 95.4530 | 91.0507 | 5523 | 1825 | 5521 | 263 | 7 | 2.6616 | |
| ciseli-custom | SNP | ti | map_l100_m2_e1 | het | 83.3126 | 78.8921 | 88.2578 | 75.0429 | 24425 | 6535 | 24398 | 3246 | 86 | 2.6494 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 45.6361 | 81.6092 | 31.6742 | 99.7077 | 71 | 16 | 70 | 151 | 4 | 2.6490 | |
| eyeh-varpipe | SNP | ti | segdup | * | 98.6842 | 99.8874 | 97.5096 | 89.9888 | 19515 | 22 | 19225 | 491 | 13 | 2.6477 | |
| gduggal-bwavard | SNP | tv | map_l250_m1_e0 | * | 88.5182 | 97.6199 | 80.9689 | 91.3881 | 2584 | 63 | 2574 | 605 | 16 | 2.6446 | |
| gduggal-bwavard | SNP | ti | map_l250_m1_e0 | het | 87.4417 | 97.6415 | 79.1712 | 92.9128 | 2898 | 70 | 2885 | 759 | 20 | 2.6351 | |
| ltrigg-rtg1 | SNP | ti | * | het | 99.8539 | 99.8618 | 99.8460 | 16.3632 | 1280123 | 1771 | 1280140 | 1975 | 52 | 2.6329 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.2906 | 99.5974 | 98.9856 | 37.6602 | 7422 | 30 | 7416 | 76 | 2 | 2.6316 | |
| jmaeng-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 94.0671 | 98.5507 | 89.9736 | 92.9238 | 340 | 5 | 341 | 38 | 1 | 2.6316 | |
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | * | 98.2427 | 99.2701 | 97.2364 | 94.1737 | 1360 | 10 | 1337 | 38 | 1 | 2.6316 | |
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | het | 97.4661 | 96.8957 | 98.0433 | 89.2902 | 1904 | 61 | 1904 | 38 | 1 | 2.6316 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 98.2626 | 98.6842 | 97.8446 | 62.1511 | 1725 | 23 | 1725 | 38 | 1 | 2.6316 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 54.6319 | 51.6463 | 57.9838 | 83.3700 | 549 | 514 | 788 | 571 | 15 | 2.6270 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | * | 97.4561 | 99.7067 | 95.3048 | 77.8264 | 10880 | 32 | 10819 | 533 | 14 | 2.6266 | |
| ciseli-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 85.2279 | 98.0433 | 75.3754 | 62.9512 | 6063 | 121 | 6073 | 1984 | 52 | 2.6210 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.9166 | 92.5873 | 97.3660 | 75.0931 | 8456 | 677 | 8465 | 229 | 6 | 2.6201 | |
| mlin-fermikit | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.9166 | 92.5873 | 97.3660 | 75.0931 | 8456 | 677 | 8465 | 229 | 6 | 2.6201 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | * | 98.1181 | 99.6468 | 96.6356 | 72.2026 | 32725 | 116 | 31854 | 1109 | 29 | 2.6150 | |
| ciseli-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 84.1283 | 97.5299 | 73.9648 | 66.0177 | 1303 | 33 | 1304 | 459 | 12 | 2.6144 | |
| raldana-dualsentieon | SNP | tv | map_l150_m1_e0 | * | 98.9969 | 99.0469 | 98.9470 | 74.2022 | 10808 | 104 | 10806 | 115 | 3 | 2.6087 | |
| gduggal-snapvard | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 82.6781 | 95.0672 | 73.1457 | 83.0764 | 4529 | 235 | 4497 | 1651 | 43 | 2.6045 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | * | 97.8643 | 99.7502 | 96.0484 | 73.9143 | 15976 | 40 | 15872 | 653 | 17 | 2.6034 | |
| gduggal-snapfb | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 67.7466 | 98.0570 | 51.7501 | 74.5351 | 3028 | 60 | 3090 | 2881 | 75 | 2.6033 | |
| ciseli-custom | SNP | tv | map_siren | het | 84.4100 | 82.1595 | 86.7874 | 65.3031 | 23505 | 5104 | 23489 | 3576 | 93 | 2.6007 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 41.3700 | 79.5535 | 27.9532 | 77.8018 | 677 | 174 | 717 | 1848 | 48 | 2.5974 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 73.0270 | 60.6987 | 91.6395 | 81.0025 | 834 | 540 | 844 | 77 | 2 | 2.5974 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 2.5316 | 100.0000 | 1.2821 | 72.3404 | 1 | 0 | 1 | 77 | 2 | 2.5974 | |