PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35501-35550 / 86044 show all | |||||||||||||||
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 98.4371 | 99.0591 | 97.8229 | 71.0281 | 45272 | 430 | 45697 | 1017 | 32 | 3.1465 | |
| ltrigg-rtg1 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.4371 | 99.0591 | 97.8229 | 71.0281 | 45272 | 430 | 45697 | 1017 | 32 | 3.1465 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 40.3265 | 76.3636 | 27.3973 | 91.1318 | 126 | 39 | 120 | 318 | 10 | 3.1447 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 95.3051 | 97.3787 | 93.3180 | 50.0419 | 4495 | 121 | 4455 | 319 | 10 | 3.1348 | |
| gduggal-snapvard | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 76.8075 | 94.3048 | 64.7869 | 87.6558 | 6491 | 392 | 6399 | 3478 | 109 | 3.1340 | |
| gduggal-snapfb | SNP | tv | HG002compoundhet | het | 69.0686 | 96.5761 | 53.7572 | 56.2100 | 4513 | 160 | 4600 | 3957 | 124 | 3.1337 | |
| ckim-isaac | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 93.9529 | 91.4315 | 96.6173 | 65.9835 | 907 | 85 | 914 | 32 | 1 | 3.1250 | |
| egarrison-hhga | SNP | ti | segdup | het | 99.5306 | 99.5927 | 99.4687 | 89.2156 | 11981 | 49 | 11981 | 64 | 2 | 3.1250 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.1654 | 99.5545 | 98.7794 | 37.2444 | 18102 | 81 | 18127 | 224 | 7 | 3.1250 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.4206 | 97.7525 | 97.0909 | 66.2577 | 3175 | 73 | 3204 | 96 | 3 | 3.1250 | |
| mlin-fermikit | SNP | * | map_l250_m1_e0 | het | 41.8044 | 26.6036 | 97.5328 | 80.1621 | 1265 | 3490 | 1265 | 32 | 1 | 3.1250 | |
| asubramanian-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 89.7661 | 88.9855 | 90.5605 | 92.0254 | 307 | 38 | 307 | 32 | 1 | 3.1250 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 42.1053 | 92.3077 | 27.2727 | 80.4444 | 12 | 1 | 12 | 32 | 1 | 3.1250 | |
| ciseli-custom | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 71.2738 | 92.2490 | 58.0701 | 68.6719 | 2904 | 244 | 3015 | 2177 | 68 | 3.1236 | |
| mlin-fermikit | SNP | ti | * | het | 98.8419 | 97.7886 | 99.9182 | 14.5462 | 1253549 | 28348 | 1253519 | 1026 | 32 | 3.1189 | |
| gduggal-snapplat | INDEL | I6_15 | HG002complexvar | het | 33.8586 | 23.3121 | 61.8312 | 60.5350 | 549 | 1806 | 520 | 321 | 10 | 3.1153 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 92.4797 | 98.7648 | 86.9467 | 79.4810 | 1999 | 25 | 1925 | 289 | 9 | 3.1142 | |
| jmaeng-gatk | SNP | tv | segdup | * | 98.1687 | 99.3085 | 97.0548 | 94.6921 | 8473 | 59 | 8469 | 257 | 8 | 3.1128 | |
| gduggal-bwavard | SNP | * | map_l250_m1_e0 | * | 90.1392 | 97.5353 | 83.7857 | 91.6472 | 7044 | 178 | 6976 | 1350 | 42 | 3.1111 | |
| gduggal-bwavard | SNP | tv | map_l125_m0_e0 | het | 89.1615 | 98.1141 | 81.7062 | 85.2941 | 4318 | 83 | 4310 | 965 | 30 | 3.1088 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 76.8078 | 93.2966 | 65.2719 | 67.9320 | 2881 | 207 | 2917 | 1552 | 48 | 3.0928 | |
| eyeh-varpipe | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 91.4663 | 98.5411 | 85.3394 | 78.6638 | 2972 | 44 | 2829 | 486 | 15 | 3.0864 | |
| jmaeng-gatk | INDEL | D1_5 | segdup | * | 96.8249 | 99.3654 | 94.4110 | 96.0107 | 1096 | 7 | 1098 | 65 | 2 | 3.0769 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 14.4737 | 90.2062 | 0 | 0 | 22 | 130 | 4 | 3.0769 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 0.0000 | 0.0000 | 12.1622 | 90.0738 | 0 | 0 | 18 | 130 | 4 | 3.0769 | |
| asubramanian-gatk | SNP | * | segdup | het | 98.0720 | 96.9394 | 99.2313 | 93.3046 | 16787 | 530 | 16781 | 130 | 4 | 3.0769 | |
| ckim-vqsr | SNP | tv | map_siren | het | 88.5833 | 80.0482 | 99.1556 | 77.7872 | 22901 | 5708 | 22897 | 195 | 6 | 3.0769 | |
| qzeng-custom | SNP | * | segdup | het | 98.3153 | 98.7007 | 97.9329 | 93.6755 | 17092 | 225 | 16961 | 358 | 11 | 3.0726 | |
| ciseli-custom | SNP | * | map_l250_m2_e0 | het | 62.7486 | 57.4894 | 69.0669 | 93.5182 | 2986 | 2208 | 2983 | 1336 | 41 | 3.0689 | |
| cchapple-custom | SNP | * | segdup | het | 99.4246 | 99.7863 | 99.0654 | 93.2744 | 17280 | 37 | 17278 | 163 | 5 | 3.0675 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | het | 98.1718 | 99.6126 | 96.7721 | 75.4925 | 28282 | 110 | 27402 | 914 | 28 | 3.0635 | |
| ciseli-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 87.3183 | 98.1551 | 78.6365 | 59.0389 | 3937 | 74 | 3968 | 1078 | 33 | 3.0612 | |
| ltrigg-rtg1 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 97.0035 | 98.2095 | 95.8267 | 71.5438 | 2962 | 54 | 3008 | 131 | 4 | 3.0534 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 94.0567 | 97.5229 | 90.8285 | 81.7751 | 19094 | 485 | 19163 | 1935 | 59 | 3.0491 | |
| jpowers-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 94.0567 | 97.5229 | 90.8285 | 81.7751 | 19094 | 485 | 19163 | 1935 | 59 | 3.0491 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | * | 97.7007 | 99.5180 | 95.9486 | 82.7662 | 11974 | 58 | 11652 | 492 | 15 | 3.0488 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | * | 98.6894 | 99.7348 | 97.6657 | 67.8112 | 72211 | 192 | 69996 | 1673 | 51 | 3.0484 | |
| ciseli-custom | SNP | * | map_l250_m2_e1 | het | 62.8544 | 57.5608 | 69.2202 | 93.5567 | 3030 | 2234 | 3027 | 1346 | 41 | 3.0461 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e0 | * | 88.3689 | 80.8253 | 97.4657 | 81.7790 | 20233 | 4800 | 20229 | 526 | 16 | 3.0418 | |
| cchapple-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.6015 | 99.7463 | 97.4826 | 44.5639 | 11404 | 29 | 11462 | 296 | 9 | 3.0405 | |
| ciseli-custom | SNP | * | map_l100_m1_e0 | het | 81.6533 | 76.9704 | 86.9429 | 74.2795 | 34913 | 10446 | 34838 | 5232 | 159 | 3.0390 | |
| jmaeng-gatk | SNP | tv | map_l100_m2_e1 | * | 88.4662 | 80.9714 | 97.4899 | 81.7669 | 20472 | 4811 | 20468 | 527 | 16 | 3.0361 | |
| jmaeng-gatk | SNP | tv | map_l150_m2_e1 | * | 80.0731 | 68.3012 | 96.7480 | 89.5225 | 7856 | 3646 | 7854 | 264 | 8 | 3.0303 | |
| jpowers-varprowl | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.2113 | 98.7743 | 97.6546 | 73.0305 | 1370 | 17 | 1374 | 33 | 1 | 3.0303 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.2010 | 96.5997 | 95.8055 | 76.3827 | 2983 | 105 | 3015 | 132 | 4 | 3.0303 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 33.1579 | 52.9412 | 24.1379 | 86.1022 | 27 | 24 | 21 | 66 | 2 | 3.0303 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m1_e0 | het | 97.0881 | 98.3269 | 95.8801 | 89.2469 | 764 | 13 | 768 | 33 | 1 | 3.0303 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e0 | het | 97.1459 | 98.3607 | 95.9608 | 90.0195 | 780 | 13 | 784 | 33 | 1 | 3.0303 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | het | 97.2049 | 98.3951 | 96.0432 | 90.0501 | 797 | 13 | 801 | 33 | 1 | 3.0303 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 42.3256 | 33.3333 | 57.9618 | 80.3504 | 89 | 178 | 91 | 66 | 2 | 3.0303 | |