PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
35051-35100 / 86044 show all | |||||||||||||||
| jpowers-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 95.6086 | 96.6584 | 94.5813 | 87.2366 | 6653 | 230 | 6720 | 385 | 17 | 4.4156 | |
| jlack-gatk | SNP | tv | map_l250_m2_e0 | het | 89.1930 | 97.4227 | 82.2454 | 94.1018 | 1890 | 50 | 1890 | 408 | 18 | 4.4118 | |
| jlack-gatk | SNP | tv | map_l250_m2_e1 | het | 89.2982 | 97.4555 | 82.4010 | 94.1598 | 1915 | 50 | 1915 | 409 | 18 | 4.4010 | |
| jmaeng-gatk | SNP | ti | * | * | 99.6502 | 99.4959 | 99.8049 | 21.8521 | 2074998 | 10513 | 2074939 | 4056 | 178 | 4.3886 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | het | 98.7657 | 99.5031 | 98.0391 | 80.4407 | 12817 | 64 | 12549 | 251 | 11 | 4.3825 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 97.4310 | 98.7964 | 96.1027 | 79.7737 | 10671 | 130 | 10702 | 434 | 19 | 4.3779 | |
| bgallagher-sentieon | SNP | tv | * | * | 99.8908 | 99.9655 | 99.8163 | 21.9055 | 969355 | 335 | 969269 | 1784 | 78 | 4.3722 | |
| gduggal-snapfb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 29.0076 | 92.6829 | 17.1946 | 91.1987 | 38 | 3 | 38 | 183 | 8 | 4.3716 | |
| ciseli-custom | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 95.9357 | 97.5922 | 94.3344 | 61.2325 | 6850 | 169 | 6860 | 412 | 18 | 4.3689 | |
| asubramanian-gatk | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5829 | 98.9638 | 98.2048 | 63.2584 | 35052 | 367 | 35066 | 641 | 28 | 4.3682 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 57.8169 | 95.5224 | 41.4538 | 69.3558 | 192 | 9 | 211 | 298 | 13 | 4.3624 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 97.6076 | 97.1467 | 98.0729 | 73.4952 | 44398 | 1304 | 44428 | 873 | 38 | 4.3528 | |
| asubramanian-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 97.6076 | 97.1467 | 98.0729 | 73.4952 | 44398 | 1304 | 44428 | 873 | 38 | 4.3528 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e1 | * | 94.1240 | 97.9830 | 90.5575 | 83.2923 | 11270 | 232 | 11240 | 1172 | 51 | 4.3515 | |
| gduggal-bwafb | INDEL | D1_5 | map_l125_m2_e1 | het | 97.4146 | 97.7922 | 97.0399 | 86.1324 | 753 | 17 | 754 | 23 | 1 | 4.3478 | |
| raldana-dualsentieon | SNP | * | map_l250_m1_e0 | * | 98.0609 | 98.0338 | 98.0881 | 87.5648 | 7080 | 142 | 7080 | 138 | 6 | 4.3478 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_siren | * | 98.6051 | 98.0033 | 99.2142 | 76.9745 | 2945 | 60 | 2904 | 23 | 1 | 4.3478 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.4268 | 99.6283 | 99.2261 | 57.2682 | 2948 | 11 | 2949 | 23 | 1 | 4.3478 | |
| ndellapenna-hhga | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.1298 | 99.5085 | 98.7541 | 58.9047 | 1822 | 9 | 1823 | 23 | 1 | 4.3478 | |
| ckim-gatk | INDEL | * | map_l250_m0_e0 | het | 80.3150 | 96.2264 | 68.9189 | 98.4901 | 51 | 2 | 51 | 23 | 1 | 4.3478 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m1_e0 | het | 96.6592 | 97.9424 | 95.4092 | 91.8124 | 476 | 10 | 478 | 23 | 1 | 4.3478 | |
| ltrigg-rtg1 | SNP | tv | map_siren | het | 99.1688 | 98.8255 | 99.5144 | 50.4058 | 28273 | 336 | 28278 | 138 | 6 | 4.3478 | |
| hfeng-pmm2 | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 98.4084 | 97.3342 | 99.5065 | 66.1830 | 4637 | 127 | 4638 | 23 | 1 | 4.3478 | |
| jlack-gatk | INDEL | * | map_l125_m1_e0 | het | 92.6306 | 98.1273 | 87.7170 | 91.3380 | 1310 | 25 | 1314 | 184 | 8 | 4.3478 | |
| gduggal-snapfb | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 87.6693 | 98.8054 | 78.7892 | 66.3228 | 27625 | 334 | 27904 | 7512 | 326 | 4.3397 | |
| ciseli-custom | SNP | tv | map_l250_m2_e0 | het | 60.1108 | 53.7113 | 68.2415 | 93.5631 | 1042 | 898 | 1040 | 484 | 21 | 4.3388 | |
| qzeng-custom | SNP | tv | segdup | het | 97.9263 | 98.4679 | 97.3907 | 94.6360 | 5206 | 81 | 5188 | 139 | 6 | 4.3166 | |
| gduggal-bwaplat | SNP | ti | segdup | het | 98.4906 | 98.1463 | 98.8374 | 94.7165 | 11807 | 223 | 11817 | 139 | 6 | 4.3166 | |
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | het | 98.7627 | 99.5083 | 98.0281 | 80.5176 | 12951 | 64 | 12677 | 255 | 11 | 4.3137 | |
| gduggal-snapvard | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 57.3256 | 86.6375 | 42.8337 | 90.6835 | 791 | 122 | 783 | 1045 | 45 | 4.3062 | |
| ciseli-custom | SNP | tv | map_l250_m2_e1 | het | 60.2121 | 53.7913 | 68.3733 | 93.6004 | 1057 | 908 | 1055 | 488 | 21 | 4.3033 | |
| gduggal-bwavard | SNP | tv | map_l150_m1_e0 | * | 93.9183 | 97.9839 | 90.1767 | 82.0762 | 10692 | 220 | 10667 | 1162 | 50 | 4.3029 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.9190 | 99.2554 | 96.6182 | 68.9966 | 2666 | 20 | 2657 | 93 | 4 | 4.3011 | |
| ckim-gatk | SNP | ti | * | het | 99.7182 | 99.6780 | 99.7585 | 24.7182 | 1277763 | 4128 | 1277713 | 3093 | 133 | 4.3000 | |
| gduggal-snapvard | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.3550 | 97.1312 | 95.5910 | 44.3893 | 7144 | 211 | 7068 | 326 | 14 | 4.2945 | |
| jli-custom | SNP | tv | * | het | 99.8561 | 99.9410 | 99.7714 | 21.8920 | 591347 | 349 | 591292 | 1355 | 58 | 4.2804 | |
| ciseli-custom | SNP | * | lowcmp_SimpleRepeat_quadTR_11to50 | * | 87.9780 | 97.7891 | 79.9560 | 49.1916 | 17781 | 402 | 17815 | 4466 | 191 | 4.2768 | |
| gduggal-bwavard | SNP | tv | map_l100_m0_e0 | * | 93.8772 | 97.8167 | 90.2427 | 78.7360 | 10842 | 242 | 10821 | 1170 | 50 | 4.2735 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 0.0000 | 0.0000 | 16.7260 | 86.6888 | 0 | 0 | 47 | 234 | 10 | 4.2735 | |
| gduggal-snapplat | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 25.4980 | 31.3725 | 21.4765 | 98.0147 | 32 | 70 | 32 | 117 | 5 | 4.2735 | |
| gduggal-bwavard | SNP | tv | map_l150_m2_e0 | * | 94.0699 | 97.9833 | 90.4572 | 83.2501 | 11126 | 229 | 11100 | 1171 | 50 | 4.2699 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 96.6308 | 99.6416 | 93.7966 | 43.2141 | 3892 | 14 | 3901 | 258 | 11 | 4.2636 | |
| gduggal-bwavard | SNP | * | map_l150_m0_e0 | * | 92.1711 | 97.2989 | 87.5568 | 86.0626 | 11707 | 325 | 11568 | 1644 | 70 | 4.2579 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 85.9520 | 98.7396 | 76.0968 | 60.6268 | 6659 | 85 | 6730 | 2114 | 90 | 4.2573 | |
| hfeng-pmm3 | SNP | ti | map_l150_m0_e0 | het | 99.0183 | 98.9602 | 99.0764 | 81.1323 | 5044 | 53 | 5042 | 47 | 2 | 4.2553 | |
| asubramanian-gatk | INDEL | * | map_l125_m0_e0 | het | 89.6574 | 87.7342 | 91.6667 | 93.1495 | 515 | 72 | 517 | 47 | 2 | 4.2553 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.8699 | 99.5676 | 98.1818 | 59.8602 | 2533 | 11 | 2538 | 47 | 2 | 4.2553 | |
| qzeng-custom | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.5348 | 99.3169 | 97.7649 | 70.3556 | 17448 | 120 | 17496 | 400 | 17 | 4.2500 | |
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | het | 99.0514 | 99.6226 | 98.4868 | 69.7302 | 29829 | 113 | 29158 | 448 | 19 | 4.2411 | |
| jlack-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 96.8586 | 99.2554 | 94.5749 | 83.0098 | 9065 | 68 | 9065 | 520 | 22 | 4.2308 | |