PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
3301-3350 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8435 | 99.7712 | 99.9160 | 32.7499 | 1308 | 3 | 1190 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m0_e0 | homalt | 99.2221 | 98.9637 | 99.4819 | 94.6493 | 191 | 2 | 192 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | homalt | 99.6477 | 99.5327 | 99.7630 | 89.0347 | 852 | 4 | 842 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | homalt | 99.6784 | 99.5731 | 99.7840 | 89.6709 | 933 | 4 | 924 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | homalt | 99.6815 | 99.5772 | 99.7861 | 89.7714 | 942 | 4 | 933 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | tv | map_siren | hetalt | 98.7001 | 98.7654 | 98.6348 | 72.7948 | 80 | 1 | 289 | 4 | 4 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | hetalt | 98.8764 | 100.0000 | 97.7778 | 95.6438 | 7 | 0 | 44 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | segdup | homalt | 99.8439 | 99.8765 | 99.8114 | 90.5570 | 3234 | 4 | 3176 | 6 | 6 | 100.0000 | |
| gduggal-bwafb | INDEL | * | func_cds | hetalt | 54.5455 | 60.0000 | 50.0000 | 50.0000 | 3 | 2 | 1 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 84.6329 | 76.2619 | 95.0680 | 66.4957 | 559 | 174 | 559 | 29 | 29 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 85.4009 | 81.1159 | 90.1639 | 84.0314 | 189 | 44 | 110 | 12 | 12 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 89.2616 | 85.6061 | 93.2432 | 87.4150 | 113 | 19 | 69 | 5 | 5 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 80.8243 | 69.1149 | 97.3105 | 42.5158 | 1882 | 841 | 796 | 22 | 22 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 72.8203 | 57.4281 | 99.4845 | 34.4595 | 719 | 533 | 193 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 92.8240 | 87.8505 | 98.3945 | 74.4282 | 470 | 65 | 429 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.6327 | 100.0000 | 68.9655 | 99.9497 | 21 | 0 | 20 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 81.5240 | 69.7071 | 98.1651 | 30.1282 | 833 | 362 | 535 | 10 | 10 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 95.1872 | 94.4745 | 95.9108 | 49.8134 | 872 | 51 | 258 | 11 | 11 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 98.4340 | 97.8625 | 99.0122 | 43.9494 | 2106 | 46 | 2105 | 21 | 21 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | * | 87.4768 | 80.1802 | 96.2343 | 47.0067 | 178 | 44 | 230 | 9 | 9 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 82.1148 | 70.0000 | 99.3007 | 50.8591 | 35 | 15 | 142 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 85.9670 | 76.8000 | 97.6190 | 25.0000 | 96 | 29 | 41 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 93.0693 | 100.0000 | 87.0370 | 48.0769 | 47 | 0 | 47 | 7 | 7 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m1_e0 | hetalt | 75.2274 | 61.2903 | 97.3684 | 92.9630 | 76 | 48 | 37 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e0 | hetalt | 75.4805 | 61.6000 | 97.4359 | 93.3219 | 77 | 48 | 38 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l100_m2_e1 | hetalt | 73.5849 | 59.0909 | 97.5000 | 93.2660 | 78 | 54 | 39 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_l150_m0_e0 | homalt | 98.4802 | 98.7805 | 98.1818 | 92.3823 | 162 | 2 | 162 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | map_siren | hetalt | 81.9967 | 71.2551 | 96.5517 | 92.6020 | 176 | 71 | 84 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | * | segdup | hetalt | 91.3096 | 87.6923 | 95.2381 | 96.9828 | 114 | 16 | 40 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | * | 95.9637 | 93.4211 | 98.6486 | 48.6111 | 71 | 5 | 73 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | * | tech_badpromoters | homalt | 98.5075 | 100.0000 | 97.0588 | 53.4247 | 33 | 0 | 33 | 1 | 1 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | hetalt | 86.0203 | 76.2545 | 98.6547 | 50.8811 | 1474 | 459 | 220 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | * | homalt | 85.6946 | 83.9835 | 87.4769 | 60.7791 | 1421 | 271 | 1418 | 203 | 203 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | hetalt | 81.6709 | 72.4696 | 93.5484 | 69.6078 | 179 | 68 | 29 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002complexvar | homalt | 81.9487 | 86.8512 | 77.5701 | 62.8472 | 251 | 38 | 249 | 72 | 72 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | * | 82.3584 | 75.6514 | 90.3704 | 28.6893 | 1771 | 570 | 1952 | 208 | 208 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | het | 83.1185 | 71.8519 | 98.5755 | 24.7427 | 291 | 114 | 1730 | 25 | 25 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | hetalt | 86.2756 | 76.4004 | 99.0826 | 35.1190 | 1473 | 455 | 216 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1901 | 87.5000 | 3.2086 | 48.1994 | 7 | 1 | 6 | 181 | 181 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | * | 72.7273 | 66.6667 | 80.0000 | 52.3810 | 8 | 4 | 8 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | func_cds | het | 75.0000 | 75.0000 | 75.0000 | 52.9412 | 6 | 2 | 6 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 77.5015 | 63.7949 | 98.7097 | 42.3792 | 622 | 353 | 153 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 73.9449 | 73.7705 | 74.1201 | 54.7329 | 360 | 128 | 358 | 125 | 125 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 0.0000 | 0.0000 | 98.2759 | 0 | 4 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 0.0000 | 0.0000 | 96.2963 | 0 | 2 | 0 | 1 | 1 | 100.0000 | ||
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 90.6233 | 84.1577 | 98.1651 | 57.4219 | 1089 | 205 | 107 | 2 | 2 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | homalt | 84.5240 | 82.7851 | 86.3375 | 67.9071 | 755 | 157 | 752 | 119 | 119 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 86.0000 | 76.2299 | 98.6425 | 50.7795 | 1472 | 459 | 218 | 3 | 3 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 80.5396 | 78.3026 | 82.9082 | 65.7841 | 978 | 271 | 975 | 201 | 201 | 100.0000 | |
| gduggal-bwafb | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 56.0000 | 63.6364 | 50.0000 | 66.6667 | 7 | 4 | 2 | 2 | 2 | 100.0000 | |