PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33351-33400 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | D16_PLUS | map_l100_m0_e0 | * | 74.1935 | 82.1429 | 67.6471 | 96.4876 | 23 | 5 | 23 | 11 | 1 | 9.0909 | |
| jlack-gatk | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 96.5732 | 100.0000 | 93.3735 | 84.6011 | 155 | 0 | 155 | 11 | 1 | 9.0909 | |
| jlack-gatk | INDEL | D6_15 | map_l125_m1_e0 | het | 89.7059 | 95.3125 | 84.7222 | 93.7984 | 61 | 3 | 61 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | SNP | tv | map_l250_m0_e0 | het | 97.7193 | 97.3776 | 98.0634 | 92.6176 | 557 | 15 | 557 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e0 | het | 97.4409 | 98.4547 | 96.4478 | 90.9902 | 892 | 14 | 896 | 33 | 3 | 9.0909 | |
| hfeng-pmm2 | INDEL | * | map_l150_m2_e1 | het | 97.3802 | 98.2684 | 96.5079 | 91.0427 | 908 | 16 | 912 | 33 | 3 | 9.0909 | |
| hfeng-pmm2 | INDEL | * | map_l250_m0_e0 | het | 88.6957 | 96.2264 | 82.2581 | 97.7139 | 51 | 2 | 51 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 95.0084 | 95.5224 | 94.5000 | 87.3578 | 192 | 9 | 189 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | het | 97.3614 | 99.1701 | 95.6175 | 89.2020 | 478 | 4 | 480 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | het | 97.5224 | 99.2218 | 95.8801 | 89.6170 | 510 | 4 | 512 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e1 | het | 97.4630 | 99.0421 | 95.9335 | 89.6756 | 517 | 5 | 519 | 22 | 2 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e0 | * | 96.8254 | 99.4565 | 94.3299 | 95.4299 | 183 | 1 | 183 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e0 | het | 95.6522 | 100.0000 | 91.6667 | 95.7378 | 121 | 0 | 121 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e1 | * | 96.8421 | 99.4595 | 94.3590 | 95.5203 | 184 | 1 | 184 | 11 | 1 | 9.0909 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l250_m2_e1 | het | 95.6863 | 100.0000 | 91.7293 | 95.8044 | 122 | 0 | 122 | 11 | 1 | 9.0909 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.7796 | 97.9625 | 99.6105 | 70.5385 | 28127 | 585 | 28128 | 110 | 10 | 9.0909 | |
| hfeng-pmm3 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.8115 | 95.9651 | 99.7303 | 78.4840 | 4067 | 171 | 4068 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m1_e0 | * | 98.4990 | 97.6190 | 99.3949 | 80.5561 | 1804 | 44 | 1807 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.5254 | 97.6501 | 99.4164 | 81.4523 | 1870 | 45 | 1874 | 11 | 1 | 9.0909 | |
| hfeng-pmm1 | INDEL | D1_5 | map_l100_m2_e1 | * | 98.5438 | 97.6792 | 99.4238 | 81.5751 | 1894 | 45 | 1898 | 11 | 1 | 9.0909 | |
| dgrover-gatk | INDEL | I1_5 | map_siren | het | 99.0766 | 98.8102 | 99.3445 | 82.4495 | 1661 | 20 | 1667 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m1_e0 | het | 95.7449 | 96.0055 | 95.4856 | 91.8049 | 697 | 29 | 698 | 33 | 3 | 9.0909 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e0 | het | 95.6835 | 95.6806 | 95.6863 | 92.2445 | 731 | 33 | 732 | 33 | 3 | 9.0909 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m2_e1 | het | 95.6493 | 95.5844 | 95.7143 | 92.3154 | 736 | 34 | 737 | 33 | 3 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m0_e0 | * | 96.9502 | 97.4194 | 96.4856 | 92.5352 | 302 | 8 | 302 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m1_e0 | het | 95.8095 | 94.0329 | 97.6546 | 92.0238 | 457 | 29 | 458 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e0 | het | 95.7972 | 93.9638 | 97.7035 | 92.7237 | 467 | 30 | 468 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | I1_5 | map_l125_m2_e1 | het | 95.7853 | 93.8976 | 97.7505 | 92.7437 | 477 | 31 | 478 | 11 | 1 | 9.0909 | |
| ckim-isaac | SNP | ti | map_l125_m1_e0 | het | 78.2097 | 64.3326 | 99.7200 | 73.5328 | 11751 | 6515 | 11751 | 33 | 3 | 9.0909 | |
| ckim-isaac | SNP | ti | map_l150_m0_e0 | het | 74.1407 | 59.0347 | 99.6358 | 83.5333 | 3009 | 2088 | 3009 | 11 | 1 | 9.0909 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | het | 94.8598 | 94.8538 | 94.8658 | 94.1088 | 811 | 44 | 813 | 44 | 4 | 9.0909 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 96.7448 | 94.4798 | 99.1212 | 50.4094 | 3714 | 217 | 3722 | 33 | 3 | 9.0909 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 92.9113 | 89.3360 | 96.7846 | 77.0025 | 6149 | 734 | 6291 | 209 | 19 | 9.0909 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e0 | het | 98.5489 | 98.4868 | 98.6111 | 85.1044 | 781 | 12 | 781 | 11 | 1 | 9.0909 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m2_e1 | het | 98.5167 | 98.3951 | 98.6386 | 85.2231 | 797 | 13 | 797 | 11 | 1 | 9.0909 | |
| dgrover-gatk | INDEL | D1_5 | map_l125_m0_e0 | het | 97.5585 | 98.2609 | 96.8661 | 90.0256 | 339 | 6 | 340 | 11 | 1 | 9.0909 | |
| ciseli-custom | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 0.0000 | 0.0000 | 38.8889 | 96.6790 | 0 | 0 | 7 | 11 | 1 | 9.0909 | |
| ciseli-custom | INDEL | C6_15 | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 0.0000 | 0.0000 | 15.3846 | 86.4583 | 0 | 0 | 2 | 11 | 1 | 9.0909 | |
| ckim-dragen | INDEL | * | map_l250_m0_e0 | * | 92.1212 | 97.4359 | 87.3563 | 97.7177 | 76 | 2 | 76 | 11 | 1 | 9.0909 | |
| ckim-dragen | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.0937 | 99.5146 | 98.6763 | 71.9257 | 820 | 4 | 820 | 11 | 1 | 9.0909 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 72.3514 | 82.3529 | 64.5161 | 94.3197 | 84 | 18 | 80 | 44 | 4 | 9.0909 | |
| gduggal-bwafb | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 79.5455 | 83.3333 | 76.0870 | 91.5905 | 35 | 7 | 35 | 11 | 1 | 9.0909 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 0.0000 | 0.0000 | 13.1579 | 95.1929 | 0 | 0 | 10 | 66 | 6 | 9.0909 | |
| gduggal-bwavard | INDEL | C16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 0.0000 | 0.0000 | 13.1579 | 95.1929 | 0 | 0 | 10 | 66 | 6 | 9.0909 | |
| gduggal-bwafb | INDEL | * | map_l125_m2_e1 | het | 96.1685 | 94.7443 | 97.6361 | 86.4189 | 1334 | 74 | 1363 | 33 | 3 | 9.0909 | |
| gduggal-bwafb | INDEL | D1_5 | map_l150_m0_e0 | * | 96.7298 | 97.2318 | 96.2329 | 91.2470 | 281 | 8 | 281 | 11 | 1 | 9.0909 | |
| asubramanian-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.3035 | 98.8131 | 99.7988 | 59.4317 | 16234 | 195 | 16370 | 33 | 3 | 9.0909 | |
| asubramanian-gatk | INDEL | * | map_l250_m1_e0 | * | 86.4236 | 84.2623 | 88.6986 | 99.0516 | 257 | 48 | 259 | 33 | 3 | 9.0909 | |
| asubramanian-gatk | INDEL | * | map_l250_m2_e0 | * | 86.7966 | 84.2900 | 89.4569 | 99.1194 | 279 | 52 | 280 | 33 | 3 | 9.0909 | |