PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33201-33250 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D1_5 | map_l125_m0_e0 | het | 88.6305 | 99.1304 | 80.1418 | 91.5077 | 342 | 3 | 339 | 84 | 8 | 9.5238 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 19.2308 | 81.4947 | 0 | 0 | 10 | 42 | 4 | 9.5238 | |
| gduggal-snapvard | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 17.6471 | 79.8419 | 0 | 0 | 9 | 42 | 4 | 9.5238 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e0 | * | 87.0000 | 94.5652 | 80.5556 | 96.3624 | 174 | 10 | 174 | 42 | 4 | 9.5238 | |
| ghariani-varprowl | INDEL | D1_5 | map_l250_m2_e1 | * | 87.0647 | 94.5946 | 80.6452 | 96.4327 | 175 | 10 | 175 | 42 | 4 | 9.5238 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7253 | 99.7898 | 99.6609 | 56.0602 | 6171 | 13 | 6171 | 21 | 2 | 9.5238 | |
| ckim-vqsr | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6445 | 99.8219 | 99.4677 | 58.2805 | 3924 | 7 | 3924 | 21 | 2 | 9.5238 | |
| dgrover-gatk | SNP | tv | map_l250_m0_e0 | het | 96.5998 | 96.8531 | 96.3478 | 94.1784 | 554 | 18 | 554 | 21 | 2 | 9.5238 | |
| ckim-isaac | SNP | * | lowcmp_SimpleRepeat_quadTR_51to200 | het | 65.6716 | 66.6667 | 64.7059 | 89.5246 | 68 | 34 | 77 | 42 | 4 | 9.5238 | |
| ltrigg-rtg2 | SNP | ti | map_l100_m0_e0 | het | 98.2231 | 96.6531 | 99.8449 | 50.2864 | 13515 | 468 | 13519 | 21 | 2 | 9.5238 | |
| gduggal-bwafb | SNP | ti | * | * | 99.8083 | 99.8659 | 99.7507 | 20.3177 | 2082722 | 2796 | 2082858 | 5206 | 495 | 9.5083 | |
| ckim-dragen | SNP | ti | map_l125_m2_e0 | het | 97.7337 | 99.0305 | 96.4704 | 78.2642 | 18693 | 183 | 18695 | 684 | 65 | 9.5029 | |
| ckim-isaac | SNP | * | * | het | 98.6547 | 97.3796 | 99.9637 | 16.8583 | 1824505 | 49096 | 1825101 | 663 | 63 | 9.5023 | |
| gduggal-snapfb | SNP | * | * | homalt | 99.6988 | 99.7992 | 99.5986 | 21.4529 | 1177792 | 2370 | 1177860 | 4747 | 451 | 9.5007 | |
| gduggal-bwafb | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 94.6826 | 98.0211 | 91.5640 | 77.5938 | 1486 | 30 | 1487 | 137 | 13 | 9.4891 | |
| jlack-gatk | SNP | ti | map_l150_m2_e0 | * | 96.1925 | 98.6739 | 93.8329 | 83.2384 | 20240 | 272 | 20236 | 1330 | 126 | 9.4737 | |
| gduggal-snapvard | SNP | ti | map_l100_m1_e0 | * | 95.0911 | 96.2467 | 93.9630 | 72.8656 | 46132 | 1799 | 45682 | 2935 | 278 | 9.4719 | |
| eyeh-varpipe | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 93.7133 | 98.5372 | 89.3396 | 84.5796 | 10643 | 158 | 9822 | 1172 | 111 | 9.4710 | |
| ghariani-varprowl | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 88.9998 | 98.0021 | 81.5123 | 84.1232 | 6524 | 133 | 6565 | 1489 | 141 | 9.4694 | |
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 98.1234 | 99.6134 | 96.6774 | 60.9972 | 27571 | 107 | 26129 | 898 | 85 | 9.4655 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e0 | het | 88.2149 | 83.1057 | 93.9935 | 92.2139 | 1156 | 235 | 1158 | 74 | 7 | 9.4595 | |
| asubramanian-gatk | INDEL | * | map_l125_m2_e1 | het | 88.1973 | 83.0256 | 94.0562 | 92.2786 | 1169 | 239 | 1171 | 74 | 7 | 9.4595 | |
| ckim-gatk | INDEL | * | map_l100_m1_e0 | het | 96.1061 | 98.6130 | 93.7235 | 89.8156 | 2204 | 31 | 2210 | 148 | 14 | 9.4595 | |
| jlack-gatk | SNP | ti | map_l150_m2_e1 | * | 96.1985 | 98.6826 | 93.8363 | 83.3002 | 20450 | 273 | 20446 | 1343 | 127 | 9.4564 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 93.6596 | 95.7079 | 91.6972 | 82.3440 | 8741 | 392 | 8769 | 794 | 75 | 9.4458 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 93.6596 | 95.7079 | 91.6972 | 82.3440 | 8741 | 392 | 8769 | 794 | 75 | 9.4458 | |
| ckim-dragen | SNP | tv | map_l125_m0_e0 | * | 97.9625 | 98.6126 | 97.3210 | 77.9914 | 6539 | 92 | 6539 | 180 | 17 | 9.4444 | |
| jlack-gatk | SNP | ti | map_l100_m2_e1 | * | 97.5095 | 99.1108 | 95.9591 | 74.4631 | 49045 | 440 | 49038 | 2065 | 195 | 9.4431 | |
| jlack-gatk | SNP | ti | map_l100_m2_e0 | * | 97.4962 | 99.1075 | 95.9365 | 74.4561 | 48524 | 437 | 48517 | 2055 | 194 | 9.4404 | |
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 97.1889 | 99.5294 | 94.9560 | 60.6805 | 17767 | 84 | 17150 | 911 | 86 | 9.4402 | |
| hfeng-pmm2 | SNP | * | map_l125_m0_e0 | het | 98.6818 | 99.0287 | 98.3373 | 78.8543 | 12541 | 123 | 12538 | 212 | 20 | 9.4340 | |
| ckim-dragen | SNP | ti | map_l125_m2_e1 | het | 97.7431 | 99.0360 | 96.4836 | 78.3312 | 18903 | 184 | 18905 | 689 | 65 | 9.4340 | |
| ltrigg-rtg1 | SNP | tv | map_l100_m1_e0 | het | 98.9516 | 98.2617 | 99.6512 | 54.6439 | 15149 | 268 | 15144 | 53 | 5 | 9.4340 | |
| jmaeng-gatk | INDEL | I1_5 | map_siren | het | 97.6442 | 98.3938 | 96.9060 | 85.7250 | 1654 | 27 | 1660 | 53 | 5 | 9.4340 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.1805 | 99.6759 | 98.6901 | 56.5693 | 3998 | 13 | 3993 | 53 | 5 | 9.4340 | |
| jlack-gatk | SNP | ti | map_l100_m0_e0 | het | 94.8297 | 98.9201 | 91.0641 | 81.0915 | 13832 | 151 | 13829 | 1357 | 128 | 9.4326 | |
| dgrover-gatk | SNP | * | * | * | 99.9456 | 99.9631 | 99.9282 | 19.2565 | 3053492 | 1127 | 3053343 | 2195 | 207 | 9.4305 | |
| ckim-dragen | SNP | tv | map_siren | * | 98.9465 | 99.4753 | 98.4233 | 61.5086 | 45689 | 241 | 45694 | 732 | 69 | 9.4262 | |
| hfeng-pmm3 | SNP | * | map_l125_m1_e0 | het | 99.4129 | 99.3132 | 99.5129 | 70.9946 | 28197 | 195 | 28191 | 138 | 13 | 9.4203 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 99.0878 | 99.0624 | 99.1133 | 72.7315 | 30851 | 292 | 30851 | 276 | 26 | 9.4203 | |
| jmaeng-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 99.0878 | 99.0624 | 99.1133 | 72.7315 | 30851 | 292 | 30851 | 276 | 26 | 9.4203 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.4666 | 99.6442 | 97.3165 | 63.6796 | 6162 | 22 | 6165 | 170 | 16 | 9.4118 | |
| gduggal-bwafb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 75.8922 | 93.2127 | 64.0000 | 92.1573 | 206 | 15 | 208 | 117 | 11 | 9.4017 | |
| jmaeng-gatk | SNP | ti | map_l100_m1_e0 | het | 92.5822 | 87.8732 | 97.8244 | 80.8303 | 26311 | 3631 | 26304 | 585 | 55 | 9.4017 | |
| ckim-dragen | SNP | ti | map_siren | het | 98.6081 | 99.5319 | 97.7013 | 60.9808 | 62090 | 292 | 62097 | 1461 | 137 | 9.3771 | |
| ckim-isaac | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 81.6460 | 74.6599 | 90.0744 | 85.4526 | 1317 | 447 | 1452 | 160 | 15 | 9.3750 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m1_e0 | het | 61.0762 | 63.3333 | 58.9744 | 88.3582 | 19 | 11 | 46 | 32 | 3 | 9.3750 | |
| qzeng-custom | INDEL | I6_15 | map_l125_m2_e0 | het | 61.6216 | 63.3333 | 60.0000 | 88.9503 | 19 | 11 | 48 | 32 | 3 | 9.3750 | |
| ltrigg-rtg2 | SNP | * | map_l125_m2_e0 | het | 98.5358 | 97.3259 | 99.7762 | 57.8912 | 28534 | 784 | 28535 | 64 | 6 | 9.3750 | |
| jmaeng-gatk | INDEL | * | map_l125_m0_e0 | * | 95.4196 | 97.8458 | 93.1109 | 92.8522 | 863 | 19 | 865 | 64 | 6 | 9.3750 | |