PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33151-33200 / 86044 show all | |||||||||||||||
| ckim-dragen | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 98.8639 | 99.1992 | 98.5310 | 73.4964 | 45336 | 366 | 45676 | 681 | 66 | 9.6916 | |
| ckim-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.5094 | 99.6893 | 99.3302 | 65.3964 | 27592 | 86 | 27582 | 186 | 18 | 9.6774 | |
| ltrigg-rtg1 | SNP | * | map_l100_m1_e0 | het | 98.9962 | 98.2804 | 99.7226 | 54.6285 | 44579 | 780 | 44576 | 124 | 12 | 9.6774 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | * | 98.9405 | 99.4800 | 98.4068 | 90.5464 | 7844 | 41 | 7659 | 124 | 12 | 9.6774 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | * | 98.7186 | 99.5542 | 97.8969 | 90.7430 | 2903 | 13 | 2886 | 62 | 6 | 9.6774 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e0 | het | 99.5618 | 99.4285 | 99.6954 | 65.7218 | 30447 | 175 | 30440 | 93 | 9 | 9.6774 | |
| hfeng-pmm3 | SNP | ti | map_l125_m0_e0 | het | 99.1947 | 99.1407 | 99.2487 | 75.9543 | 8192 | 71 | 8190 | 62 | 6 | 9.6774 | |
| ckim-dragen | INDEL | * | map_siren | het | 97.4637 | 98.1145 | 96.8216 | 84.6377 | 4423 | 85 | 4417 | 145 | 14 | 9.6552 | |
| ckim-dragen | SNP | tv | map_l150_m2_e1 | * | 98.2467 | 98.9045 | 97.5976 | 79.0607 | 11376 | 126 | 11375 | 280 | 27 | 9.6429 | |
| ckim-gatk | SNP | ti | map_siren | het | 96.2259 | 94.0079 | 98.5512 | 68.8261 | 58644 | 3738 | 58635 | 862 | 83 | 9.6288 | |
| gduggal-snapplat | INDEL | * | map_siren | het | 79.1743 | 73.0923 | 86.3603 | 90.4763 | 3295 | 1213 | 3552 | 561 | 54 | 9.6257 | |
| asubramanian-gatk | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 98.9673 | 98.9982 | 98.9364 | 66.6862 | 17392 | 176 | 17395 | 187 | 18 | 9.6257 | |
| ckim-dragen | INDEL | I1_5 | segdup | * | 97.2226 | 99.2446 | 95.2813 | 95.0536 | 1051 | 8 | 1050 | 52 | 5 | 9.6154 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e0 | het | 99.2203 | 99.1589 | 99.2819 | 76.4022 | 7191 | 61 | 7189 | 52 | 5 | 9.6154 | |
| hfeng-pmm3 | SNP | tv | map_l150_m2_e1 | het | 99.2305 | 99.1698 | 99.2913 | 76.4144 | 7287 | 61 | 7285 | 52 | 5 | 9.6154 | |
| jlack-gatk | INDEL | I1_5 | map_l125_m2_e1 | * | 96.2945 | 98.3908 | 94.2857 | 90.2392 | 856 | 14 | 858 | 52 | 5 | 9.6154 | |
| gduggal-snapvard | INDEL | C16_PLUS | * | het | 0.0000 | 0.0000 | 23.5294 | 84.9558 | 0 | 0 | 16 | 52 | 5 | 9.6154 | |
| qzeng-custom | INDEL | C1_5 | * | * | 82.3488 | 80.0000 | 84.8397 | 96.6709 | 8 | 2 | 291 | 52 | 5 | 9.6154 | |
| ghariani-varprowl | SNP | tv | map_siren | het | 97.7279 | 99.4512 | 96.0633 | 68.6369 | 28452 | 157 | 28453 | 1166 | 112 | 9.6055 | |
| gduggal-snapplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 55.7555 | 54.6245 | 56.9343 | 95.0071 | 691 | 574 | 702 | 531 | 51 | 9.6045 | |
| ghariani-varprowl | SNP | tv | map_l250_m0_e0 | het | 88.7470 | 97.2028 | 81.6446 | 94.8874 | 556 | 16 | 556 | 125 | 12 | 9.6000 | |
| gduggal-snapfb | SNP | ti | segdup | * | 99.1459 | 99.5137 | 98.7809 | 90.9477 | 19442 | 95 | 19446 | 240 | 23 | 9.5833 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 97.8070 | 99.7711 | 95.9189 | 66.2738 | 3922 | 9 | 3925 | 167 | 16 | 9.5808 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e1 | * | 95.1804 | 96.2979 | 94.0886 | 74.3752 | 47653 | 1832 | 47192 | 2965 | 284 | 9.5784 | |
| hfeng-pmm3 | SNP | ti | map_l100_m2_e1 | het | 99.5633 | 99.4315 | 99.6955 | 65.7255 | 30784 | 176 | 30777 | 94 | 9 | 9.5745 | |
| ckim-gatk | INDEL | * | map_l125_m1_e0 | * | 96.6080 | 98.5287 | 94.7608 | 90.7066 | 2076 | 31 | 2080 | 115 | 11 | 9.5652 | |
| gduggal-bwavard | INDEL | C16_PLUS | * | * | 0.0000 | 0.0000 | 32.7485 | 94.0314 | 0 | 0 | 56 | 115 | 11 | 9.5652 | |
| jlack-gatk | SNP | ti | map_l150_m1_e0 | * | 96.1043 | 98.6353 | 93.7000 | 82.0564 | 19443 | 269 | 19439 | 1307 | 125 | 9.5639 | |
| ckim-gatk | SNP | * | map_l125_m0_e0 | het | 79.9330 | 68.2249 | 96.4920 | 90.8886 | 8640 | 4024 | 8637 | 314 | 30 | 9.5541 | |
| jlack-gatk | SNP | ti | map_l100_m1_e0 | * | 97.4794 | 99.0945 | 95.9161 | 72.9428 | 47497 | 434 | 47490 | 2022 | 193 | 9.5450 | |
| ckim-vqsr | SNP | ti | map_siren | * | 86.3605 | 76.1935 | 99.6585 | 68.7036 | 76464 | 23891 | 76451 | 262 | 25 | 9.5420 | |
| ckim-dragen | SNP | ti | map_l100_m1_e0 | het | 98.1230 | 99.2485 | 97.0227 | 71.3768 | 29717 | 225 | 29720 | 912 | 87 | 9.5395 | |
| gduggal-snapvard | SNP | ti | map_l100_m2_e0 | * | 95.1595 | 96.2807 | 94.0641 | 74.3570 | 47140 | 1821 | 46684 | 2946 | 281 | 9.5384 | |
| ckim-dragen | SNP | ti | map_l125_m1_e0 | het | 97.7308 | 99.0200 | 96.4747 | 76.6075 | 18087 | 179 | 18089 | 661 | 63 | 9.5310 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.8125 | 99.9061 | 99.7191 | 40.4113 | 7445 | 7 | 7455 | 21 | 2 | 9.5238 | |
| ckim-dragen | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.7237 | 99.8934 | 99.5546 | 42.4719 | 4684 | 5 | 4694 | 21 | 2 | 9.5238 | |
| cchapple-custom | INDEL | D1_5 | map_siren | het | 97.0834 | 98.5946 | 95.6177 | 79.2698 | 2245 | 32 | 2291 | 105 | 10 | 9.5238 | |
| cchapple-custom | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.4328 | 99.7924 | 99.0758 | 46.4998 | 6730 | 14 | 6754 | 63 | 6 | 9.5238 | |
| jlack-gatk | SNP | ti | map_l125_m0_e0 | * | 95.3999 | 98.4093 | 92.5691 | 82.2522 | 12559 | 203 | 12557 | 1008 | 96 | 9.5238 | |
| jlack-gatk | INDEL | * | map_l100_m1_e0 | * | 95.3278 | 97.9922 | 92.8044 | 87.6441 | 3514 | 72 | 3521 | 273 | 26 | 9.5238 | |
| jlack-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 96.8806 | 98.3570 | 95.4480 | 86.8027 | 1317 | 22 | 1321 | 63 | 6 | 9.5238 | |
| asubramanian-gatk | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 98.8761 | 98.7371 | 99.0155 | 76.7875 | 2111 | 27 | 2112 | 21 | 2 | 9.5238 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e0 | het | 51.4023 | 43.0421 | 63.7931 | 93.5841 | 133 | 176 | 148 | 84 | 8 | 9.5238 | |
| anovak-vg | INDEL | I1_5 | map_l150_m2_e1 | het | 50.9949 | 42.2713 | 64.2553 | 93.6383 | 134 | 183 | 151 | 84 | 8 | 9.5238 | |
| jli-custom | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6647 | 99.7834 | 99.5462 | 33.7248 | 4606 | 10 | 4607 | 21 | 2 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 55.7895 | 95.3086 | 0 | 0 | 53 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 46.1538 | 95.6594 | 0 | 0 | 36 | 42 | 4 | 9.5238 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.0758 | 99.7696 | 98.3916 | 38.1103 | 3897 | 9 | 3854 | 63 | 6 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 56.2500 | 95.3466 | 0 | 0 | 54 | 42 | 4 | 9.5238 | |
| gduggal-bwavard | INDEL | C1_5 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 46.8354 | 95.6807 | 0 | 0 | 37 | 42 | 4 | 9.5238 | |