PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
33051-33100 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.3592 | 99.0869 | 99.6329 | 31.6608 | 2713 | 25 | 2714 | 10 | 1 | 10.0000 | |
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | het | 88.4956 | 94.3396 | 83.3333 | 97.8198 | 50 | 3 | 50 | 10 | 1 | 10.0000 | |
| bgallagher-sentieon | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2777 | 97.5124 | 95.0739 | 88.5181 | 196 | 5 | 193 | 10 | 1 | 10.0000 | |
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 83.1933 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 0.0000 | 0.0000 | 82.6087 | 0 | 0 | 0 | 20 | 2 | 10.0000 | ||
| astatham-gatk | INDEL | D1_5 | map_l100_m0_e0 | het | 96.0913 | 95.6007 | 96.5870 | 86.7899 | 565 | 26 | 566 | 20 | 2 | 10.0000 | |
| astatham-gatk | INDEL | I1_5 | map_siren | het | 95.5862 | 92.0880 | 99.3606 | 82.8978 | 1548 | 133 | 1554 | 10 | 1 | 10.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m1_e0 | het | 96.5230 | 96.3606 | 96.6860 | 89.4465 | 1165 | 44 | 1167 | 40 | 4 | 10.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e0 | het | 96.5708 | 96.3376 | 96.8051 | 89.9162 | 1210 | 46 | 1212 | 40 | 4 | 10.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l100_m2_e1 | het | 96.5215 | 96.2145 | 96.8304 | 89.9905 | 1220 | 48 | 1222 | 40 | 4 | 10.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7832 | 95.3307 | 94.2418 | 93.7274 | 490 | 24 | 491 | 30 | 3 | 10.0000 | |
| ckim-vqsr | INDEL | D1_5 | map_l150_m2_e1 | het | 94.6619 | 95.0192 | 94.3074 | 93.7699 | 496 | 26 | 497 | 30 | 3 | 10.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m1_e0 | het | 94.7247 | 92.9766 | 96.5398 | 94.1248 | 278 | 21 | 279 | 10 | 1 | 10.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e0 | het | 94.7249 | 92.8803 | 96.6443 | 94.6326 | 287 | 22 | 288 | 10 | 1 | 10.0000 | |
| ckim-vqsr | INDEL | I1_5 | map_l150_m2_e1 | het | 94.6912 | 92.7445 | 96.7213 | 94.6529 | 294 | 23 | 295 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m1_e0 | het | 95.2880 | 95.7895 | 94.7917 | 96.7022 | 182 | 8 | 182 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e0 | het | 95.7346 | 96.1905 | 95.2830 | 96.8183 | 202 | 8 | 202 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | * | map_l250_m2_e1 | het | 95.7547 | 96.2085 | 95.3052 | 96.8873 | 203 | 8 | 203 | 10 | 1 | 10.0000 | |
| dgrover-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.2777 | 97.5124 | 95.0739 | 88.6465 | 196 | 5 | 193 | 10 | 1 | 10.0000 | |
| egarrison-hhga | INDEL | I1_5 | map_l100_m1_e0 | het | 98.5825 | 98.4556 | 98.7097 | 83.9478 | 765 | 12 | 765 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m1_e0 | het | 94.2847 | 97.2973 | 91.4530 | 95.8788 | 108 | 3 | 107 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e0 | het | 94.7466 | 97.5207 | 92.1260 | 96.0730 | 118 | 3 | 117 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | D1_5 | map_l250_m2_e1 | het | 94.7887 | 97.5410 | 92.1875 | 96.1481 | 119 | 3 | 118 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | I1_5 | map_l125_m0_e0 | het | 94.5170 | 94.2708 | 94.7644 | 90.7191 | 181 | 11 | 181 | 10 | 1 | 10.0000 | |
| ckim-dragen | SNP | tv | map_l150_m1_e0 | * | 98.2065 | 98.8636 | 97.5581 | 77.3404 | 10788 | 124 | 10787 | 270 | 27 | 10.0000 | |
| ckim-gatk | INDEL | I1_5 | map_siren | het | 97.9415 | 98.8102 | 97.0879 | 85.2732 | 1661 | 20 | 1667 | 50 | 5 | 10.0000 | |
| ckim-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.6801 | 99.7532 | 99.6071 | 56.0538 | 27890 | 69 | 27889 | 110 | 11 | 10.0000 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.8587 | 98.7069 | 99.0109 | 72.0332 | 2977 | 39 | 3003 | 30 | 3 | 10.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 94.7350 | 92.2280 | 97.3822 | 89.6054 | 356 | 30 | 372 | 10 | 1 | 10.0000 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 93.6110 | 90.9420 | 96.4413 | 90.6799 | 251 | 25 | 271 | 10 | 1 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l125_m2_e0 | het | 95.7173 | 96.4055 | 95.0390 | 90.2021 | 1341 | 50 | 1341 | 70 | 7 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l250_m1_e0 | het | 92.0043 | 94.2105 | 89.8990 | 96.4744 | 179 | 11 | 178 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e0 | het | 92.7521 | 94.7619 | 90.8257 | 96.6436 | 199 | 11 | 198 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | * | map_l250_m2_e1 | het | 92.7858 | 94.7867 | 90.8676 | 96.7304 | 200 | 11 | 199 | 20 | 2 | 10.0000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l100_m2_e0 | het | 78.9957 | 93.7500 | 68.2540 | 96.5385 | 45 | 3 | 43 | 20 | 2 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m1_e0 | het | 96.0240 | 97.6013 | 94.4969 | 82.5992 | 1180 | 29 | 1202 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | het | 96.0894 | 97.5318 | 94.6889 | 83.3900 | 1225 | 31 | 1248 | 70 | 7 | 10.0000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | het | 96.1254 | 97.5552 | 94.7368 | 83.5172 | 1237 | 31 | 1260 | 70 | 7 | 10.0000 | |
| ckim-gatk | SNP | ti | map_l125_m1_e0 | het | 88.7011 | 81.4464 | 97.3746 | 85.8996 | 14877 | 3389 | 14873 | 401 | 40 | 9.9751 | |
| ghariani-varprowl | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 70.4099 | 93.3699 | 56.5131 | 85.6582 | 2211 | 157 | 2269 | 1746 | 174 | 9.9656 | |
| asubramanian-gatk | SNP | * | lowcmp_SimpleRepeat_diTR_11to50 | het | 97.8322 | 98.8294 | 96.8550 | 70.8320 | 6163 | 73 | 6190 | 201 | 20 | 9.9503 | |
| asubramanian-gatk | SNP | * | segdup | * | 98.1237 | 96.8005 | 99.4836 | 92.0357 | 27169 | 898 | 27163 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m1_e0 | het | 96.0483 | 98.2103 | 93.9795 | 90.0412 | 2195 | 40 | 2201 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e0 | het | 96.1235 | 98.1795 | 94.1518 | 90.6489 | 2265 | 42 | 2270 | 141 | 14 | 9.9291 | |
| jmaeng-gatk | INDEL | * | map_l100_m2_e1 | het | 96.1817 | 98.2074 | 94.2378 | 90.6863 | 2301 | 42 | 2306 | 141 | 14 | 9.9291 | |
| ckim-vqsr | SNP | * | segdup | * | 98.8099 | 98.0689 | 99.5622 | 93.7251 | 27525 | 542 | 27519 | 121 | 12 | 9.9174 | |
| jmaeng-gatk | INDEL | * | map_l125_m2_e1 | * | 96.6186 | 98.1124 | 95.1697 | 91.5159 | 2183 | 42 | 2187 | 111 | 11 | 9.9099 | |
| jmaeng-gatk | SNP | ti | map_siren | * | 94.5677 | 90.5256 | 98.9876 | 65.0046 | 90847 | 9508 | 90832 | 929 | 92 | 9.9031 | |
| asubramanian-gatk | SNP | * | HG002compoundhet | * | 97.7516 | 96.6501 | 98.8785 | 41.8929 | 24957 | 865 | 24950 | 283 | 28 | 9.8940 | |
| hfeng-pmm3 | SNP | ti | map_l100_m1_e0 | het | 99.5602 | 99.4256 | 99.6952 | 64.3351 | 29770 | 172 | 29763 | 91 | 9 | 9.8901 | |