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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecallPrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
32701-32750 / 86044 show all
asubramanian-gatkINDELI1_5map_l100_m1_e0het
87.1648
79.0219
97.1787
89.3631
614163620182
11.1111
asubramanian-gatkINDELI1_5map_l100_m2_e0het
87.2148
79.0668
97.2350
90.0428
627166633182
11.1111
asubramanian-gatkINDELI1_5map_l100_m2_e1het
87.1298
78.8889
97.2932
90.0657
639171647182
11.1111
asubramanian-gatkSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.2429
98.9091
99.5790
55.5792
276543052767411713
11.1111
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.1776
97.0330
99.3494
70.2755
302199243023619822
11.1111
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
99.0398
98.5800
99.5039
51.7553
180526180591
11.1111
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.1776
97.0330
99.3494
70.2755
302199243023619822
11.1111
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
97.1162
97.6582
96.5801
61.6655
1543371525546
11.1111
gduggal-snapfbINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
5.2632
75.0000
001182
11.1111
gduggal-bwaplatSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
90.3792
84.8945
96.6216
83.4493
12872291287455
11.1111
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
0.0000
0.0000
55.5556
94.9343
0090728
11.1111
gduggal-bwavardINDELC1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
0.0000
0.0000
52.0000
94.9170
0078728
11.1111
gduggal-bwavardINDELC1_5map_l150_m2_e0*
0.0000
0.0000
41.3043
96.3434
0019273
11.1111
gduggal-bwavardINDELC1_5map_l150_m2_e0het
0.0000
0.0000
32.5000
96.4093
0013273
11.1111
gduggal-bwavardINDELC1_5map_l150_m2_e1*
0.0000
0.0000
42.5532
96.3509
0020273
11.1111
gduggal-bwavardINDELC1_5map_l150_m2_e1het
0.0000
0.0000
34.1463
96.4004
0014273
11.1111
gduggal-bwavardINDELC1_5map_l250_m1_e0*
0.0000
0.0000
30.7692
98.0798
00491
11.1111
gduggal-bwavardINDELC1_5map_l250_m1_e0het
0.0000
0.0000
18.1818
98.1450
00291
11.1111
gduggal-bwavardINDELC1_5map_l250_m2_e0*
0.0000
0.0000
30.7692
98.2736
00491
11.1111
gduggal-bwavardINDELC1_5map_l250_m2_e0het
0.0000
0.0000
18.1818
98.3409
00291
11.1111
gduggal-bwavardINDELC1_5map_l250_m2_e1*
0.0000
0.0000
30.7692
98.3269
00491
11.1111
gduggal-bwavardINDELC1_5map_l250_m2_e1het
0.0000
0.0000
18.1818
98.3942
00291
11.1111
ckim-isaacSNPtilowcmp_SimpleRepeat_quadTR_51to200het
66.2722
72.7273
60.8696
89.6513
481856364
11.1111
ckim-isaacSNPtimap_l150_m2_e1het
75.7313
61.0680
99.6614
80.0450
794850677948273
11.1111
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7762
99.6141
99.9389
56.2917
14713571471591
11.1111
dgrover-gatkINDEL*map_l125_m0_e0het
97.2014
97.4446
96.9595
91.3349
57215574182
11.1111
dgrover-gatkINDEL*map_l250_m0_e0het
89.2857
94.3396
84.7458
98.0281
5035091
11.1111
dgrover-gatkINDEL*segduphet
99.0133
99.2497
98.7780
95.2951
1455111455182
11.1111
dgrover-gatkINDELD1_5map_l150_m0_e0*
97.4236
97.9239
96.9283
92.3837
283628491
11.1111
ckim-vqsrINDELI1_5map_l150_m0_e0*
95.4802
96.0227
94.9438
94.8196
169716991
11.1111
egarrison-hhgaINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.4400
98.0595
98.8235
76.0788
7581575691
11.1111
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.6793
98.2539
97.1113
81.2381
44904798448121333148
11.1028
ckim-dragenSNP*map_l125_m2_e1*
98.4159
99.0996
97.7415
74.8940
46777425467831081120
11.1008
ghariani-varprowlSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
95.1859
99.0236
91.6345
64.6332
27686273277902537281
11.0761
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
93.4033
98.6198
88.7109
85.7951
678895681386796
11.0727
gduggal-snapfbINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
77.8072
93.6126
66.5680
74.1046
8946190045250
11.0619
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.9892
98.4640
99.5201
68.3963
450007024500021724
11.0599
raldana-dualsentieonSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.9892
98.4640
99.5201
68.3963
450007024500021724
11.0599
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
80.5920
93.3333
70.9115
86.5051
6724852921724
11.0599
jmaeng-gatkSNP*map_l150_m0_e0*
72.2268
57.5050
97.0803
92.6384
69195113691620823
11.0577
gduggal-bwavardSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
96.3297
97.9167
94.7933
63.6617
249153247613615
11.0294
jli-customSNPti**
99.9536
99.9637
99.9435
16.8976
208475575620847161179130
11.0263
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.4073
99.5608
99.2542
75.3973
14507641450710912
11.0092
jmaeng-gatkSNPtimap_l150_m2_e0*
81.1449
69.3009
97.8719
88.3988
1421562971421130934
11.0032
gduggal-snapplatINDEL*map_l100_m2_e0het
79.5566
73.6888
86.4399
92.5370
1700607185529132
10.9966
bgallagher-sentieonSNPtvmap_l150_m0_e0*
98.4884
99.1375
97.8477
81.2755
41383641379110
10.9890
gduggal-snapvardINDELC1_5map_l100_m2_e0het
0.0000
0.0000
41.0072
95.7686
0057829
10.9756
gduggal-bwafbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
94.6420
95.6229
93.6811
78.6041
18722857187841267139
10.9708