PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32301-32350 / 86044 show all | |||||||||||||||
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | het | 92.9134 | 98.3333 | 88.0597 | 92.8875 | 59 | 1 | 59 | 8 | 1 | 12.5000 | |
| ckim-dragen | INDEL | D16_PLUS | map_l125_m2_e0 | * | 83.3333 | 92.5926 | 75.7576 | 97.6035 | 25 | 2 | 25 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e0 | het | 95.8350 | 92.1448 | 99.8331 | 76.0408 | 4786 | 408 | 4786 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | * | map_l250_m2_e1 | het | 95.8720 | 92.2112 | 99.8355 | 76.2366 | 4854 | 410 | 4854 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7441 | 99.6928 | 99.7955 | 25.9231 | 3894 | 12 | 3904 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e0 | het | 48.6111 | 33.3333 | 89.7436 | 93.3504 | 70 | 140 | 70 | 8 | 1 | 12.5000 | |
| mlin-fermikit | INDEL | * | map_l250_m2_e1 | het | 48.4429 | 33.1754 | 89.7436 | 93.5537 | 70 | 141 | 70 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | I16_PLUS | map_siren | homalt | 69.6721 | 71.4286 | 68.0000 | 85.3801 | 15 | 6 | 17 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.0728 | 99.4536 | 98.6949 | 79.7288 | 546 | 3 | 605 | 8 | 1 | 12.5000 | |
| qzeng-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 85.6095 | 92.7536 | 79.4872 | 92.6630 | 256 | 20 | 279 | 72 | 9 | 12.5000 | |
| qzeng-custom | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 99.3861 | 99.7540 | 99.0208 | 56.4034 | 2433 | 6 | 2427 | 24 | 3 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m1_e0 | * | 98.3132 | 97.8342 | 98.7970 | 80.6967 | 1310 | 29 | 1314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e0 | * | 98.3491 | 97.8801 | 98.8227 | 82.1466 | 1339 | 29 | 1343 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l100_m2_e1 | * | 98.3812 | 97.9211 | 98.8456 | 82.2966 | 1366 | 29 | 1370 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l150_m0_e0 | * | 95.7635 | 96.0227 | 95.5056 | 89.8575 | 169 | 7 | 170 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m1_e0 | * | 92.9577 | 93.3962 | 92.5234 | 94.8483 | 99 | 7 | 99 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e0 | * | 93.3921 | 93.8053 | 92.9825 | 95.4272 | 106 | 7 | 106 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | I1_5 | map_l250_m2_e1 | * | 93.4498 | 93.8596 | 93.0435 | 95.5461 | 107 | 7 | 107 | 8 | 1 | 12.5000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | * | 98.8533 | 98.6747 | 99.0326 | 85.4529 | 819 | 11 | 819 | 8 | 1 | 12.5000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | * | 98.8304 | 98.5998 | 99.0621 | 86.7258 | 845 | 12 | 845 | 8 | 1 | 12.5000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | * | 98.8479 | 98.6207 | 99.0762 | 86.8887 | 858 | 12 | 858 | 8 | 1 | 12.5000 | |
| qzeng-custom | INDEL | C6_15 | * | homalt | 0.0000 | 0.0000 | 66.6667 | 95.9664 | 0 | 0 | 16 | 8 | 1 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m1_e0 | * | 94.5813 | 94.4262 | 94.7368 | 94.7396 | 288 | 17 | 288 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e0 | * | 95.0076 | 94.8640 | 95.1515 | 95.0798 | 314 | 17 | 314 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | * | map_l250_m2_e1 | * | 95.0376 | 94.8949 | 95.1807 | 95.1912 | 316 | 17 | 316 | 16 | 2 | 12.5000 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l150_m0_e0 | * | 97.4141 | 97.5779 | 97.2509 | 89.7535 | 282 | 7 | 283 | 8 | 1 | 12.5000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.3498 | 96.6561 | 98.0535 | 76.7797 | 1214 | 42 | 1209 | 24 | 3 | 12.5000 | |
| hfeng-pmm1 | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7102 | 99.4704 | 99.9511 | 57.5377 | 16342 | 87 | 16340 | 8 | 1 | 12.5000 | |
| gduggal-snapfb | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 46.7522 | 70.4861 | 34.9754 | 65.3140 | 203 | 85 | 284 | 528 | 66 | 12.5000 | |
| gduggal-snapfb | INDEL | I1_5 | map_l125_m0_e0 | het | 92.5065 | 93.2292 | 91.7949 | 87.1287 | 179 | 13 | 179 | 16 | 2 | 12.5000 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 97.1716 | 99.7669 | 94.7078 | 58.2028 | 856 | 2 | 859 | 48 | 6 | 12.5000 | |
| gduggal-snapplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 69.2765 | 58.7912 | 84.3137 | 82.8571 | 321 | 225 | 430 | 80 | 10 | 12.5000 | |
| gduggal-snapplat | INDEL | D6_15 | segdup | het | 48.4621 | 36.9565 | 70.3704 | 96.6376 | 34 | 58 | 19 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 2.1108 | 1.1142 | 20.0000 | 87.1795 | 4 | 355 | 2 | 8 | 1 | 12.5000 | |
| gduggal-snapvard | SNP | ti | segdup | het | 98.2336 | 97.4314 | 99.0491 | 94.0407 | 11721 | 309 | 11666 | 112 | 14 | 12.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m1_e0 | homalt | 95.4612 | 93.4097 | 97.6048 | 81.5368 | 326 | 23 | 326 | 8 | 1 | 12.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e0 | homalt | 95.6522 | 93.6813 | 97.7077 | 82.5500 | 341 | 23 | 341 | 8 | 1 | 12.5000 | |
| ghariani-varprowl | INDEL | D1_5 | map_l125_m2_e1 | homalt | 95.6044 | 93.5484 | 97.7528 | 82.6087 | 348 | 24 | 348 | 8 | 1 | 12.5000 | |
| gduggal-bwaplat | SNP | * | * | het | 98.8209 | 98.1336 | 99.5179 | 30.8495 | 1838619 | 34968 | 1839500 | 8912 | 1113 | 12.4888 | |
| ciseli-custom | SNP | tv | segdup | * | 95.0488 | 98.0661 | 92.2117 | 92.0351 | 8367 | 165 | 8347 | 705 | 88 | 12.4823 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e0 | het | 99.2145 | 99.5129 | 98.9179 | 70.0977 | 46173 | 226 | 46162 | 505 | 63 | 12.4752 | |
| bgallagher-sentieon | SNP | * | map_l100_m2_e1 | het | 99.2207 | 99.5181 | 98.9251 | 70.1134 | 46672 | 226 | 46661 | 507 | 63 | 12.4260 | |
| ckim-gatk | INDEL | * | map_l100_m2_e0 | * | 97.0660 | 98.4024 | 95.7654 | 89.0665 | 3634 | 59 | 3641 | 161 | 20 | 12.4224 | |
| ckim-gatk | INDEL | * | map_l100_m2_e1 | * | 97.0874 | 98.3759 | 95.8323 | 89.0990 | 3695 | 61 | 3702 | 161 | 20 | 12.4224 | |
| anovak-vg | INDEL | I1_5 | map_l125_m2_e0 | het | 49.5663 | 40.2414 | 64.5161 | 91.8362 | 200 | 297 | 220 | 121 | 15 | 12.3967 | |
| ghariani-varprowl | SNP | tv | map_l100_m2_e0 | het | 97.2146 | 99.3218 | 95.1950 | 76.6930 | 15670 | 107 | 15671 | 791 | 98 | 12.3894 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 83.1128 | 95.5215 | 73.5573 | 89.2251 | 1685 | 79 | 1708 | 614 | 76 | 12.3779 | |
| cchapple-custom | SNP | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 99.2564 | 99.6414 | 98.8744 | 60.9154 | 35292 | 127 | 35487 | 404 | 50 | 12.3762 | |
| ckim-gatk | SNP | ti | map_l125_m0_e0 | het | 80.6416 | 69.0185 | 96.9723 | 90.3096 | 5703 | 2560 | 5701 | 178 | 22 | 12.3596 | |
| gduggal-bwaplat | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 63.9582 | 52.6316 | 81.4969 | 78.9220 | 390 | 351 | 392 | 89 | 11 | 12.3596 | |