PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32251-32300 / 86044 show all | |||||||||||||||
| jli-custom | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.8967 | 99.3952 | 98.4032 | 71.6308 | 986 | 6 | 986 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2044 | 98.8843 | 99.5266 | 75.4930 | 1684 | 19 | 1682 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.7805 | 98.5063 | 97.0653 | 87.3586 | 1319 | 20 | 1323 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 97.8271 | 98.5380 | 97.1264 | 88.2650 | 1348 | 20 | 1352 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 97.8688 | 98.5663 | 97.1811 | 88.3046 | 1375 | 20 | 1379 | 40 | 5 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l125_m0_e0 | * | 96.6800 | 98.3871 | 95.0311 | 92.5047 | 305 | 5 | 306 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 96.8484 | 98.1168 | 95.6124 | 93.1462 | 521 | 10 | 523 | 24 | 3 | 12.5000 | |
| jmaeng-gatk | INDEL | I6_15 | map_siren | het | 93.6620 | 93.0070 | 94.3262 | 88.6473 | 133 | 10 | 133 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6967 | 99.7400 | 99.6534 | 39.6128 | 4604 | 12 | 4600 | 16 | 2 | 12.5000 | |
| jmaeng-gatk | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.7157 | 99.7174 | 99.7139 | 56.2929 | 27880 | 79 | 27879 | 80 | 10 | 12.5000 | |
| ltrigg-rtg2 | INDEL | * | map_l100_m2_e0 | het | 97.4110 | 96.2722 | 98.5771 | 78.4124 | 2221 | 86 | 2217 | 32 | 4 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.1797 | 98.9154 | 97.4549 | 72.8477 | 912 | 10 | 919 | 24 | 3 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m1_e0 | * | 98.0469 | 96.8750 | 99.2474 | 78.8205 | 1054 | 34 | 1055 | 8 | 1 | 12.5000 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l125_m2_e0 | * | 98.0968 | 96.9379 | 99.2838 | 80.1281 | 1108 | 35 | 1109 | 8 | 1 | 12.5000 | |
| jmaeng-gatk | INDEL | * | map_l250_m1_e0 | * | 92.6752 | 95.4098 | 90.0929 | 97.2306 | 291 | 14 | 291 | 32 | 4 | 12.5000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e0 | * | 93.2353 | 95.7704 | 90.8309 | 97.3828 | 317 | 14 | 317 | 32 | 4 | 12.5000 | |
| jmaeng-gatk | INDEL | * | map_l250_m2_e1 | * | 93.2749 | 95.7958 | 90.8832 | 97.4381 | 319 | 14 | 319 | 32 | 4 | 12.5000 | |
| ckim-isaac | SNP | * | segdup | het | 98.3305 | 96.7604 | 99.9523 | 88.4697 | 16756 | 561 | 16758 | 8 | 1 | 12.5000 | |
| ckim-isaac | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 96.9558 | 94.9708 | 99.0256 | 50.8383 | 812 | 43 | 813 | 8 | 1 | 12.5000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | * | 67.9069 | 51.4704 | 99.7662 | 76.9939 | 3413 | 3218 | 3413 | 8 | 1 | 12.5000 | |
| ckim-isaac | SNP | tv | map_l125_m0_e0 | het | 71.3076 | 55.5101 | 99.6736 | 79.7505 | 2443 | 1958 | 2443 | 8 | 1 | 12.5000 | |
| ckim-vqsr | INDEL | * | map_l150_m1_e0 | * | 96.2213 | 96.0389 | 96.4045 | 93.0291 | 1285 | 53 | 1287 | 48 | 6 | 12.5000 | |
| egarrison-hhga | INDEL | I1_5 | map_siren | het | 98.8677 | 98.6913 | 99.0448 | 81.1755 | 1659 | 22 | 1659 | 16 | 2 | 12.5000 | |
| ckim-vqsr | INDEL | D1_5 | map_l125_m0_e0 | * | 96.4143 | 97.5806 | 95.2756 | 92.2773 | 484 | 12 | 484 | 24 | 3 | 12.5000 | |
| dgrover-gatk | INDEL | D16_PLUS | map_siren | * | 92.1664 | 95.1049 | 89.4040 | 94.7129 | 136 | 7 | 135 | 16 | 2 | 12.5000 | |
| ckim-dragen | INDEL | I1_5 | map_l150_m2_e1 | het | 93.6184 | 92.4290 | 94.8387 | 92.0082 | 293 | 24 | 294 | 16 | 2 | 12.5000 | |
| ckim-dragen | SNP | * | lowcmp_SimpleRepeat_diTR_51to200 | * | 85.0575 | 88.0952 | 82.2222 | 96.8750 | 37 | 5 | 37 | 8 | 1 | 12.5000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 77.4037 | 66.6667 | 92.2631 | 96.6489 | 2 | 1 | 477 | 40 | 5 | 12.5000 | |
| cchapple-custom | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 76.4641 | 66.6667 | 89.6373 | 96.7233 | 2 | 1 | 346 | 40 | 5 | 12.5000 | |
| cchapple-custom | INDEL | D16_PLUS | map_l100_m0_e0 | * | 77.9661 | 82.1429 | 74.1935 | 94.2056 | 23 | 5 | 23 | 8 | 1 | 12.5000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m1_e0 | * | 96.7211 | 97.3485 | 96.1018 | 81.7490 | 1799 | 49 | 1775 | 72 | 9 | 12.5000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e0 | * | 96.7824 | 97.3368 | 96.2343 | 82.5675 | 1864 | 51 | 1840 | 72 | 9 | 12.5000 | |
| cchapple-custom | INDEL | D1_5 | map_l100_m2_e1 | * | 96.8194 | 97.3698 | 96.2752 | 82.6901 | 1888 | 51 | 1861 | 72 | 9 | 12.5000 | |
| cchapple-custom | INDEL | D1_5 | map_l125_m0_e0 | * | 95.9758 | 96.7742 | 95.1904 | 87.1920 | 480 | 16 | 475 | 24 | 3 | 12.5000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | het | 94.8942 | 94.9833 | 94.8052 | 89.4916 | 284 | 15 | 292 | 16 | 2 | 12.5000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | het | 94.8873 | 94.8220 | 94.9527 | 90.6157 | 293 | 16 | 301 | 16 | 2 | 12.5000 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | het | 95.0223 | 94.9527 | 95.0920 | 90.6349 | 301 | 16 | 310 | 16 | 2 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 0.0000 | 0.0000 | 25.3333 | 95.0166 | 0 | 0 | 19 | 56 | 7 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e0 | * | 0.0000 | 0.0000 | 5.8824 | 97.5398 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| ciseli-custom | INDEL | C1_5 | map_l125_m2_e1 | * | 0.0000 | 0.0000 | 5.8824 | 97.5540 | 0 | 0 | 1 | 16 | 2 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m0_e0 | * | 97.3834 | 99.0792 | 95.7447 | 89.2325 | 538 | 5 | 540 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m1_e0 | * | 96.8962 | 98.4190 | 95.4198 | 92.2035 | 498 | 8 | 500 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.9726 | 98.4586 | 95.5307 | 92.9472 | 511 | 8 | 513 | 24 | 3 | 12.5000 | |
| ckim-gatk | INDEL | I1_5 | map_l150_m2_e1 | * | 97.0398 | 98.4934 | 95.6284 | 92.9688 | 523 | 8 | 525 | 24 | 3 | 12.5000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.7261 | 99.8504 | 99.6021 | 49.5356 | 4005 | 6 | 4005 | 16 | 2 | 12.5000 | |
| ckim-gatk | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.6078 | 99.8428 | 99.3740 | 52.6140 | 2540 | 4 | 2540 | 16 | 2 | 12.5000 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | * | 69.7981 | 54.3568 | 97.4931 | 96.0316 | 2489 | 2090 | 2489 | 64 | 8 | 12.5000 | |
| ckim-gatk | SNP | ti | map_l250_m1_e0 | het | 72.9254 | 58.6253 | 96.4523 | 96.6462 | 1740 | 1228 | 1740 | 64 | 8 | 12.5000 | |
| ckim-gatk | INDEL | D16_PLUS | segdup | het | 89.7436 | 100.0000 | 81.3953 | 97.3292 | 37 | 0 | 35 | 8 | 1 | 12.5000 | |
| ckim-gatk | INDEL | D6_15 | map_l100_m0_e0 | * | 94.7867 | 97.0874 | 92.5926 | 91.6731 | 100 | 3 | 100 | 8 | 1 | 12.5000 | |