PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32051-32100 / 86044 show all | |||||||||||||||
| egarrison-hhga | SNP | * | * | het | 99.8773 | 99.8048 | 99.9499 | 18.3927 | 1869930 | 3657 | 1869954 | 938 | 124 | 13.2196 | |
| egarrison-hhga | SNP | ti | * | het | 99.8877 | 99.8228 | 99.9527 | 17.2025 | 1279619 | 2272 | 1279622 | 606 | 80 | 13.2013 | |
| ghariani-varprowl | SNP | * | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 98.4684 | 99.6391 | 97.3249 | 58.7610 | 17115 | 62 | 17136 | 471 | 62 | 13.1635 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e0 | * | 81.6618 | 74.5446 | 90.2813 | 93.3861 | 1637 | 559 | 1765 | 190 | 25 | 13.1579 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e1 | het | 98.7185 | 97.8205 | 99.6332 | 61.5213 | 10323 | 230 | 10322 | 38 | 5 | 13.1579 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m1_e0 | * | 97.9664 | 98.7304 | 97.2141 | 87.0980 | 1322 | 17 | 1326 | 38 | 5 | 13.1579 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e0 | * | 98.0091 | 98.7573 | 97.2721 | 88.0110 | 1351 | 17 | 1355 | 38 | 5 | 13.1579 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | * | 98.0472 | 98.7814 | 97.3239 | 88.0481 | 1378 | 17 | 1382 | 38 | 5 | 13.1579 | |
| cchapple-custom | INDEL | D1_5 | map_l150_m1_e0 | * | 95.8402 | 96.9317 | 94.7730 | 87.3013 | 695 | 22 | 689 | 38 | 5 | 13.1579 | |
| gduggal-bwafb | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | * | 98.8486 | 99.6390 | 98.0706 | 65.3592 | 3864 | 14 | 3863 | 76 | 10 | 13.1579 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | het | 98.5901 | 97.6240 | 99.5756 | 74.7725 | 8916 | 217 | 8916 | 38 | 5 | 13.1579 | |
| hfeng-pmm3 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | het | 98.5901 | 97.6240 | 99.5756 | 74.7725 | 8916 | 217 | 8916 | 38 | 5 | 13.1579 | |
| mlin-fermikit | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.3589 | 97.3161 | 99.4242 | 37.2504 | 6563 | 181 | 6562 | 38 | 5 | 13.1579 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 94.1513 | 95.3774 | 92.9563 | 76.6652 | 11018 | 534 | 11046 | 837 | 110 | 13.1422 | |
| gduggal-snapfb | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 94.1513 | 95.3774 | 92.9563 | 76.6652 | 11018 | 534 | 11046 | 837 | 110 | 13.1422 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 90.3474 | 85.5479 | 95.7174 | 70.9701 | 9181 | 1551 | 9186 | 411 | 54 | 13.1387 | |
| bgallagher-sentieon | SNP | tv | map_siren | * | 99.5565 | 99.7083 | 99.4051 | 58.5993 | 45796 | 134 | 45788 | 274 | 36 | 13.1387 | |
| ciseli-custom | SNP | * | segdup | * | 96.6280 | 98.6033 | 94.7303 | 91.0474 | 27675 | 392 | 27504 | 1530 | 201 | 13.1373 | |
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 88.2477 | 83.3900 | 93.7063 | 86.7826 | 1471 | 293 | 1474 | 99 | 13 | 13.1313 | |
| asubramanian-gatk | INDEL | * | map_l100_m2_e0 | het | 89.6413 | 84.6987 | 95.1965 | 90.0770 | 1954 | 353 | 1962 | 99 | 13 | 13.1313 | |
| hfeng-pmm2 | SNP | tv | map_l125_m0_e0 | * | 98.7817 | 99.0499 | 98.5149 | 77.4668 | 6568 | 63 | 6567 | 99 | 13 | 13.1313 | |
| gduggal-bwavard | INDEL | * | map_l250_m1_e0 | het | 77.8894 | 96.8421 | 65.1408 | 96.6811 | 184 | 6 | 185 | 99 | 13 | 13.1313 | |
| gduggal-bwaplat | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 64.8336 | 51.1501 | 88.5122 | 95.7847 | 467 | 446 | 470 | 61 | 8 | 13.1148 | |
| cchapple-custom | SNP | ti | segdup | * | 99.6040 | 99.8311 | 99.3779 | 91.2552 | 19504 | 33 | 19490 | 122 | 16 | 13.1148 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 38.4615 | 88.9511 | 0 | 0 | 205 | 328 | 43 | 13.1098 | |
| hfeng-pmm2 | SNP | ti | map_l100_m2_e0 | * | 99.5384 | 99.5445 | 99.5323 | 66.9341 | 48738 | 223 | 48731 | 229 | 30 | 13.1004 | |
| gduggal-bwafb | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 95.1505 | 98.5769 | 91.9543 | 85.8273 | 4087 | 59 | 4103 | 359 | 47 | 13.0919 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e0 | het | 98.6238 | 99.3381 | 97.9198 | 79.8967 | 7204 | 48 | 7202 | 153 | 20 | 13.0719 | |
| bgallagher-sentieon | SNP | tv | map_l150_m2_e1 | het | 98.6417 | 99.3468 | 97.9466 | 79.9186 | 7300 | 48 | 7298 | 153 | 20 | 13.0719 | |
| gduggal-snapvard | INDEL | C1_5 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 54.3265 | 100.0000 | 37.2933 | 91.2179 | 3 | 0 | 857 | 1441 | 188 | 13.0465 | |
| hfeng-pmm2 | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 99.3761 | 98.8412 | 99.9168 | 52.9178 | 27635 | 324 | 27634 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | SNP | ti | map_l100_m2_e1 | * | 99.5423 | 99.5494 | 99.5352 | 66.9275 | 49262 | 223 | 49255 | 230 | 30 | 13.0435 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m1_e0 | * | 97.9354 | 99.0237 | 96.8707 | 88.7477 | 710 | 7 | 712 | 23 | 3 | 13.0435 | |
| hfeng-pmm2 | INDEL | D1_5 | map_l150_m2_e0 | * | 98.0583 | 99.0826 | 97.0551 | 89.2528 | 756 | 7 | 758 | 23 | 3 | 13.0435 | |
| ckim-gatk | SNP | ti | map_l250_m2_e0 | * | 71.3054 | 56.1701 | 97.6058 | 96.1011 | 2813 | 2195 | 2813 | 69 | 9 | 13.0435 | |
| ckim-gatk | SNP | ti | map_l250_m2_e0 | het | 74.5328 | 60.6638 | 96.6226 | 96.6749 | 1974 | 1280 | 1974 | 69 | 9 | 13.0435 | |
| jmaeng-gatk | INDEL | I1_5 | map_l150_m2_e0 | * | 96.8684 | 98.0732 | 95.6929 | 93.1327 | 509 | 10 | 511 | 23 | 3 | 13.0435 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m1_e0 | het | 95.9766 | 95.1791 | 96.7877 | 87.8644 | 691 | 35 | 693 | 23 | 3 | 13.0435 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e0 | het | 95.7656 | 94.6335 | 96.9251 | 88.4193 | 723 | 41 | 725 | 23 | 3 | 13.0435 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m2_e1 | het | 95.7305 | 94.5455 | 96.9456 | 88.5091 | 728 | 42 | 730 | 23 | 3 | 13.0435 | |
| raldana-dualsentieon | INDEL | * | map_l125_m0_e0 | * | 96.9865 | 96.5986 | 97.3774 | 87.3376 | 852 | 30 | 854 | 23 | 3 | 13.0435 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 97.5475 | 95.7291 | 99.4363 | 77.3949 | 4057 | 181 | 4057 | 23 | 3 | 13.0435 | |
| gduggal-bwaplat | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | het | 87.2311 | 80.0232 | 95.8659 | 91.4316 | 5508 | 1375 | 5519 | 238 | 31 | 13.0252 | |
| ckim-gatk | SNP | * | map_l150_m0_e0 | het | 75.5141 | 62.1285 | 96.2515 | 93.6797 | 4933 | 3007 | 4930 | 192 | 25 | 13.0208 | |
| gduggal-snapplat | INDEL | * | map_l125_m2_e1 | * | 81.5919 | 74.4270 | 90.2834 | 93.4615 | 1656 | 569 | 1784 | 192 | 25 | 13.0208 | |
| bgallagher-sentieon | SNP | ti | map_l100_m2_e0 | het | 99.2634 | 99.4775 | 99.0503 | 69.3746 | 30462 | 160 | 30455 | 292 | 38 | 13.0137 | |
| ckim-isaac | SNP | tv | * | het | 98.4858 | 97.0571 | 99.9572 | 19.2906 | 574291 | 17413 | 574576 | 246 | 32 | 13.0081 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e0 | het | 79.4528 | 97.1429 | 67.2131 | 96.8634 | 204 | 6 | 205 | 100 | 13 | 13.0000 | |
| gduggal-bwavard | INDEL | * | map_l250_m2_e1 | het | 79.5322 | 97.1564 | 67.3203 | 96.9369 | 205 | 6 | 206 | 100 | 13 | 13.0000 | |
| bgallagher-sentieon | SNP | * | map_l100_m1_e0 | het | 99.2217 | 99.5084 | 98.9366 | 68.7750 | 45136 | 223 | 45125 | 485 | 63 | 12.9897 | |