PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31801-31850 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | * | map_l250_m2_e1 | het | 74.8369 | 69.1943 | 81.4815 | 98.3230 | 146 | 65 | 154 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m1_e0 | het | 94.3674 | 95.8506 | 92.9293 | 85.6812 | 462 | 20 | 460 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | D1_5 | map_l150_m2_e0 | het | 94.7138 | 96.1089 | 93.3586 | 86.7121 | 494 | 20 | 492 | 35 | 5 | 14.2857 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m2_e1 | het | 93.8879 | 94.3218 | 93.4579 | 89.6652 | 299 | 18 | 300 | 21 | 3 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e0 | homalt | 95.2221 | 92.9624 | 97.5945 | 78.4125 | 568 | 43 | 568 | 14 | 2 | 14.2857 | |
| ghariani-varprowl | INDEL | D1_5 | map_l100_m2_e1 | homalt | 95.2066 | 92.9032 | 97.6271 | 78.5766 | 576 | 44 | 576 | 14 | 2 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | * | 0.0000 | 0.0000 | 30.0000 | 96.9880 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m1_e0 | het | 0.0000 | 0.0000 | 22.2222 | 96.9283 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | * | 0.0000 | 0.0000 | 30.0000 | 97.2452 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e0 | het | 0.0000 | 0.0000 | 22.2222 | 97.1875 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e1 | * | 0.0000 | 0.0000 | 30.0000 | 97.3333 | 0 | 0 | 3 | 7 | 1 | 14.2857 | |
| gduggal-snapvard | INDEL | C6_15 | map_l100_m2_e1 | het | 0.0000 | 0.0000 | 22.2222 | 97.2810 | 0 | 0 | 2 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | * | 45.1325 | 31.6239 | 78.7879 | 95.2518 | 37 | 80 | 26 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | het | 47.3921 | 35.9375 | 69.5652 | 94.6882 | 23 | 41 | 16 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | * | 45.3591 | 31.7460 | 79.4118 | 95.4485 | 40 | 86 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | het | 47.0393 | 35.2113 | 70.8333 | 94.8052 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | * | 44.8505 | 31.2500 | 79.4118 | 95.5145 | 40 | 88 | 27 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e1 | het | 47.0393 | 35.2113 | 70.8333 | 94.8608 | 25 | 46 | 17 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | INDEL | D6_15 | map_siren | * | 43.1110 | 29.0766 | 83.3333 | 91.7593 | 148 | 361 | 105 | 21 | 3 | 14.2857 | |
| gduggal-snapplat | INDEL | I6_15 | segdup | homalt | 33.4855 | 23.4043 | 58.8235 | 93.4109 | 11 | 36 | 10 | 7 | 1 | 14.2857 | |
| gduggal-snapplat | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 42.1053 | 50.0000 | 36.3636 | 98.1002 | 4 | 4 | 4 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | * | 81.1610 | 90.4762 | 73.5849 | 91.1519 | 38 | 4 | 39 | 14 | 2 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | * | 93.9597 | 97.2222 | 90.9091 | 63.5071 | 70 | 2 | 70 | 7 | 1 | 14.2857 | |
| jpowers-varprowl | SNP | tv | tech_badpromoters | het | 88.8889 | 96.9697 | 82.0513 | 68.2927 | 32 | 1 | 32 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 94.1694 | 92.2078 | 96.2162 | 75.6258 | 355 | 30 | 356 | 14 | 2 | 14.2857 | |
| ltrigg-rtg1 | INDEL | D6_15 | map_siren | * | 97.5076 | 96.4637 | 98.5743 | 79.6096 | 491 | 18 | 484 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 97.6725 | 96.5079 | 98.8655 | 65.2198 | 608 | 22 | 610 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 97.5327 | 97.1098 | 97.9592 | 67.3333 | 336 | 10 | 336 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | * | map_l125_m2_e0 | het | 98.7273 | 97.7659 | 99.7078 | 62.2269 | 28663 | 655 | 28664 | 84 | 12 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.4110 | 99.2557 | 99.5668 | 65.5731 | 4801 | 36 | 4827 | 21 | 3 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | het | 99.3508 | 99.3647 | 99.3369 | 68.1260 | 3128 | 20 | 3146 | 21 | 3 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7697 | 99.7184 | 99.8211 | 26.0771 | 3895 | 11 | 3905 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e0 | het | 98.7318 | 97.7485 | 99.7352 | 62.6803 | 18451 | 425 | 18453 | 49 | 7 | 14.2857 | |
| ltrigg-rtg1 | SNP | ti | map_l125_m2_e1 | het | 98.7433 | 97.7681 | 99.7381 | 62.7777 | 18661 | 426 | 18663 | 49 | 7 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | HG002compoundhet | homalt | 99.0027 | 98.2290 | 99.7886 | 40.4282 | 3328 | 60 | 3304 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.8184 | 99.8912 | 99.7456 | 35.4899 | 2755 | 3 | 2745 | 7 | 1 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | map_l125_m2_e0 | het | 98.7191 | 97.7974 | 99.6584 | 61.3796 | 10212 | 230 | 10211 | 35 | 5 | 14.2857 | |
| ltrigg-rtg1 | SNP | tv | segdup | * | 98.9694 | 99.5663 | 98.3796 | 89.2053 | 8495 | 37 | 8500 | 140 | 20 | 14.2857 | |
| ltrigg-rtg2 | INDEL | * | map_l150_m0_e0 | * | 96.3239 | 94.1634 | 98.5859 | 85.8854 | 484 | 30 | 488 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | C1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 95.6250 | 96.0851 | 0 | 0 | 153 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m0_e0 | * | 97.7664 | 96.4079 | 99.1637 | 75.6190 | 832 | 31 | 830 | 7 | 1 | 14.2857 | |
| ltrigg-rtg2 | INDEL | D1_5 | map_l100_m2_e0 | * | 98.0973 | 96.9713 | 99.2497 | 77.4882 | 1857 | 58 | 1852 | 14 | 2 | 14.2857 | |
| jli-custom | INDEL | D6_15 | map_siren | * | 97.7205 | 96.8566 | 98.6000 | 82.0660 | 493 | 16 | 493 | 7 | 1 | 14.2857 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.6524 | 99.7101 | 99.5947 | 36.6587 | 3440 | 10 | 3440 | 14 | 2 | 14.2857 | |
| jli-custom | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5097 | 99.6726 | 99.3473 | 37.7178 | 2131 | 7 | 2131 | 14 | 2 | 14.2857 | |
| jmaeng-gatk | INDEL | * | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.7777 | 99.7261 | 99.8294 | 60.1055 | 16384 | 45 | 16383 | 28 | 4 | 14.2857 | |
| ghariani-varprowl | SNP | tv | map_siren | * | 98.2281 | 99.2140 | 97.2616 | 65.3754 | 45569 | 361 | 45570 | 1283 | 183 | 14.2634 | |
| gduggal-bwafb | SNP | tv | map_l100_m2_e0 | het | 98.4689 | 99.0556 | 97.8891 | 72.5475 | 15628 | 149 | 15628 | 337 | 48 | 14.2433 | |
| gduggal-bwaplat | SNP | ti | * | * | 99.0047 | 98.3196 | 99.6994 | 24.2468 | 2050467 | 35044 | 2050804 | 6183 | 880 | 14.2326 | |
| gduggal-snapplat | SNP | tv | HG002complexvar | het | 96.9038 | 96.2928 | 97.5225 | 28.0304 | 145146 | 5588 | 145527 | 3697 | 526 | 14.2278 | |