PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
31101-31150 / 86044 show all | |||||||||||||||
| hfeng-pmm2 | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 97.8866 | 96.2401 | 99.5904 | 67.7099 | 1459 | 57 | 1459 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l100_m0_e0 | homalt | 86.4629 | 91.6667 | 81.8182 | 85.2018 | 22 | 2 | 27 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m0_e0 | * | 80.3712 | 78.7234 | 82.0896 | 94.0603 | 37 | 10 | 55 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e0 | het | 82.7942 | 81.6901 | 83.9286 | 92.8297 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | D6_15 | map_l125_m2_e1 | het | 82.7942 | 81.6901 | 83.9286 | 92.9204 | 58 | 13 | 94 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 93.2492 | 92.4528 | 94.0594 | 60.0791 | 49 | 4 | 95 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | I1_5 | map_l100_m2_e1 | homalt | 82.8272 | 72.2222 | 97.0827 | 79.5966 | 390 | 150 | 599 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | func_cds | * | 79.2079 | 93.0233 | 68.9655 | 30.1205 | 40 | 3 | 40 | 18 | 3 | 16.6667 | |
| qzeng-custom | INDEL | I6_15 | map_l150_m2_e1 | * | 61.1354 | 51.8519 | 74.4681 | 94.2402 | 14 | 13 | 35 | 12 | 2 | 16.6667 | |
| qzeng-custom | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 99.6888 | 99.5692 | 99.8086 | 46.3323 | 6241 | 27 | 6258 | 12 | 2 | 16.6667 | |
| qzeng-custom | SNP | tv | tech_badpromoters | * | 93.8212 | 95.8333 | 91.8919 | 51.6340 | 69 | 3 | 68 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | * | func_cds | homalt | 97.2362 | 99.5575 | 95.0207 | 31.7280 | 225 | 1 | 229 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | C1_5 | HG002compoundhet | * | 89.2857 | 100.0000 | 80.6452 | 90.2054 | 1 | 0 | 50 | 12 | 2 | 16.6667 | |
| qzeng-custom | INDEL | C1_5 | lowcmp_SimpleRepeat_diTR_11to50 | * | 0.0000 | 0.0000 | 80.6452 | 93.0649 | 0 | 0 | 25 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | C6_15 | HG002complexvar | * | 94.6429 | 100.0000 | 89.8305 | 90.1503 | 4 | 0 | 53 | 6 | 1 | 16.6667 | |
| qzeng-custom | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 0.0000 | 0.0000 | 60.0000 | 96.3680 | 0 | 0 | 9 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | * | 98.6139 | 98.4190 | 98.8095 | 88.8938 | 498 | 8 | 498 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | * | 98.6486 | 98.4586 | 98.8395 | 90.0500 | 511 | 8 | 511 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | * | 98.6792 | 98.4934 | 98.8658 | 90.1251 | 523 | 8 | 523 | 6 | 1 | 16.6667 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.5327 | 99.1984 | 99.8692 | 31.8675 | 4579 | 37 | 4580 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | * | 96.1877 | 95.9064 | 96.4706 | 94.3428 | 164 | 7 | 164 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m1_e0 | het | 95.5357 | 96.3964 | 94.6903 | 94.5725 | 107 | 4 | 107 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | * | 96.4578 | 96.1957 | 96.7213 | 94.6460 | 177 | 7 | 177 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e0 | het | 95.9016 | 96.6942 | 95.1220 | 94.7771 | 117 | 4 | 117 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | * | 96.4770 | 96.2162 | 96.7391 | 94.7489 | 178 | 7 | 178 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | D1_5 | map_l250_m2_e1 | het | 95.9350 | 96.7213 | 95.1613 | 94.8612 | 118 | 4 | 118 | 6 | 1 | 16.6667 | |
| mlin-fermikit | SNP | ti | map_l150_m0_e0 | het | 44.5289 | 28.7424 | 98.7862 | 66.7936 | 1465 | 3632 | 1465 | 18 | 3 | 16.6667 | |
| ndellapenna-hhga | INDEL | * | map_l150_m0_e0 | het | 96.0441 | 95.6012 | 96.4912 | 91.7411 | 326 | 15 | 330 | 12 | 2 | 16.6667 | |
| rpoplin-dv42 | INDEL | D1_5 | map_l150_m0_e0 | * | 97.9275 | 97.9239 | 97.9310 | 91.1206 | 283 | 6 | 284 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 98.4581 | 99.2238 | 97.7041 | 73.3786 | 767 | 6 | 766 | 18 | 3 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | het | 98.2976 | 98.3558 | 98.2394 | 68.7282 | 1675 | 28 | 1674 | 30 | 5 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I1_5 | map_l100_m0_e0 | * | 97.5715 | 96.3168 | 98.8593 | 76.8994 | 523 | 20 | 520 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 97.9386 | 96.7655 | 99.1404 | 64.5685 | 718 | 24 | 692 | 6 | 1 | 16.6667 | |
| ltrigg-rtg2 | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.7012 | 99.7281 | 99.6744 | 30.0294 | 7335 | 20 | 7346 | 24 | 4 | 16.6667 | |
| ltrigg-rtg2 | SNP | * | map_l250_m1_e0 | het | 95.5463 | 91.5878 | 99.8624 | 74.1983 | 4355 | 400 | 4355 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_11to50 | het | 96.8397 | 95.0820 | 98.6637 | 80.8692 | 464 | 24 | 443 | 6 | 1 | 16.6667 | |
| raldana-dualsentieon | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 98.3801 | 97.1609 | 99.6303 | 75.8203 | 6468 | 189 | 6468 | 24 | 4 | 16.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8463 | 99.7898 | 99.9029 | 55.0600 | 6171 | 13 | 6171 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 99.8728 | 99.8982 | 99.8474 | 55.2916 | 3927 | 4 | 3927 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.7634 | 99.7296 | 99.7971 | 53.8905 | 2951 | 8 | 2951 | 6 | 1 | 16.6667 | |
| rpoplin-dv42 | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 99.6997 | 99.7269 | 99.6725 | 54.7543 | 1826 | 5 | 1826 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l125_m2_e1 | * | 97.5594 | 96.5517 | 98.5882 | 86.5761 | 840 | 30 | 838 | 12 | 2 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m1_e0 | het | 95.1960 | 92.6421 | 97.8947 | 88.6091 | 277 | 22 | 279 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e0 | het | 95.1813 | 92.5566 | 97.9592 | 89.7023 | 286 | 23 | 288 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | INDEL | I1_5 | map_l150_m2_e1 | het | 95.3061 | 92.7445 | 98.0132 | 89.7349 | 294 | 23 | 296 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.4445 | 99.7009 | 99.1894 | 39.5064 | 7333 | 22 | 7342 | 60 | 10 | 16.6667 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | * | 66.6667 | 68.7500 | 64.7059 | 97.8750 | 11 | 5 | 11 | 6 | 1 | 16.6667 | |
| gduggal-bwafb | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | het | 47.6190 | 50.0000 | 45.4545 | 98.2026 | 5 | 5 | 5 | 6 | 1 | 16.6667 | |
| gduggal-snapfb | INDEL | * | map_l125_m2_e1 | het | 93.4708 | 92.8977 | 94.0510 | 85.3951 | 1308 | 100 | 1328 | 84 | 14 | 16.6667 | |
| gduggal-snapfb | INDEL | * | map_l250_m0_e0 | * | 89.4737 | 87.1795 | 91.8919 | 97.7384 | 68 | 10 | 68 | 6 | 1 | 16.6667 | |