PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
30951-31000 / 86044 show all | |||||||||||||||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | het | 14.2857 | 8.6957 | 40.0000 | 95.1456 | 4 | 42 | 4 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m1_e0 | homalt | 94.8315 | 92.5439 | 97.2350 | 84.8569 | 211 | 17 | 211 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e0 | homalt | 94.9153 | 92.5620 | 97.3913 | 85.7232 | 224 | 18 | 224 | 6 | 1 | 16.6667 | |
| ghariani-varprowl | INDEL | D1_5 | map_l150_m2_e1 | homalt | 94.8240 | 92.3387 | 97.4468 | 85.7230 | 229 | 19 | 229 | 6 | 1 | 16.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m1_e0 | * | 95.8482 | 96.5993 | 95.1087 | 86.1498 | 1051 | 37 | 1050 | 54 | 9 | 16.6667 | |
| gduggal-snapfb | INDEL | D1_5 | map_l125_m2_e0 | * | 96.0014 | 96.6754 | 95.3368 | 86.9241 | 1105 | 38 | 1104 | 54 | 9 | 16.6667 | |
| gduggal-snapfb | INDEL | I1_5 | func_cds | het | 93.5987 | 96.6102 | 90.7692 | 41.4414 | 57 | 2 | 59 | 6 | 1 | 16.6667 | |
| gduggal-snapfb | INDEL | I1_5 | map_l150_m0_e0 | het | 90.7407 | 92.4528 | 89.0909 | 90.5902 | 98 | 8 | 98 | 12 | 2 | 16.6667 | |
| gduggal-snapfb | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.2685 | 99.7898 | 98.7526 | 38.0155 | 1424 | 3 | 1425 | 18 | 3 | 16.6667 | |
| gduggal-snapplat | INDEL | D1_5 | tech_badpromoters | * | 60.1093 | 57.8947 | 62.5000 | 76.8116 | 11 | 8 | 10 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_siren | * | 97.5395 | 97.4460 | 97.6331 | 85.2014 | 496 | 13 | 495 | 12 | 2 | 16.6667 | |
| bgallagher-sentieon | INDEL | I16_PLUS | map_siren | * | 94.8959 | 96.5116 | 93.3333 | 92.5926 | 83 | 3 | 84 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 99.3053 | 99.0106 | 99.6019 | 68.7862 | 1501 | 15 | 1501 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | SNP | tv | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 98.9879 | 98.5887 | 99.3902 | 70.7665 | 978 | 14 | 978 | 6 | 1 | 16.6667 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.5369 | 99.1334 | 99.9436 | 40.3106 | 10639 | 93 | 10639 | 6 | 1 | 16.6667 | |
| astatham-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | het | 99.2913 | 98.6803 | 99.9099 | 43.4022 | 6655 | 89 | 6655 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | INDEL | * | map_siren | * | 93.9319 | 90.2024 | 97.9830 | 94.1412 | 6684 | 726 | 6704 | 138 | 23 | 16.6667 | |
| astatham-gatk | INDEL | D1_5 | map_l125_m0_e0 | * | 96.4790 | 96.5726 | 96.3855 | 89.3499 | 479 | 17 | 480 | 18 | 3 | 16.6667 | |
| astatham-gatk | INDEL | D6_15 | map_siren | * | 97.2363 | 96.8566 | 97.6190 | 85.4503 | 493 | 16 | 492 | 12 | 2 | 16.6667 | |
| astatham-gatk | INDEL | I16_PLUS | map_siren | * | 94.2920 | 95.3488 | 93.2584 | 92.7642 | 82 | 4 | 83 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 0.0000 | 0.0000 | 88.1188 | 0 | 0 | 0 | 12 | 2 | 16.6667 | ||
| anovak-vg | INDEL | C6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | het | 0.0000 | 0.0000 | 87.7551 | 0 | 0 | 0 | 12 | 2 | 16.6667 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 17.8914 | 14.8148 | 22.5806 | 56.6434 | 16 | 92 | 14 | 48 | 8 | 16.6667 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e0 | het | 48.1704 | 38.4615 | 64.4359 | 89.9093 | 305 | 488 | 337 | 186 | 31 | 16.6667 | |
| anovak-vg | INDEL | I1_5 | map_l100_m2_e1 | het | 47.7657 | 37.9012 | 64.5714 | 90.0794 | 307 | 503 | 339 | 186 | 31 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m0_e0 | het | 51.9481 | 44.4444 | 62.5000 | 88.7324 | 4 | 5 | 10 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m1_e0 | het | 53.8462 | 46.6667 | 63.6364 | 86.1925 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e0 | het | 53.8462 | 46.6667 | 63.6364 | 87.4046 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| anovak-vg | INDEL | I6_15 | map_l125_m2_e1 | het | 53.8462 | 46.6667 | 63.6364 | 87.6866 | 14 | 16 | 21 | 12 | 2 | 16.6667 | |
| astatham-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | het | 99.6989 | 99.5626 | 99.8355 | 53.1956 | 3642 | 16 | 3641 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | * | 30.3884 | 17.9313 | 99.5388 | 98.3683 | 1295 | 5927 | 1295 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | * | map_l250_m1_e0 | het | 32.3296 | 19.3060 | 99.3506 | 98.5655 | 918 | 3837 | 918 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | * | 99.2920 | 98.7455 | 99.8446 | 31.3666 | 3857 | 49 | 3856 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | tv | map_l100_m1_e0 | * | 57.1254 | 40.0024 | 99.8777 | 86.7426 | 9801 | 14700 | 9799 | 12 | 2 | 16.6667 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | * | 37.4814 | 23.0755 | 99.7622 | 94.8394 | 2518 | 8394 | 2517 | 6 | 1 | 16.6667 | |
| asubramanian-gatk | SNP | tv | map_l150_m1_e0 | het | 40.8243 | 25.6695 | 99.6644 | 95.4254 | 1783 | 5163 | 1782 | 6 | 1 | 16.6667 | |
| bgallagher-sentieon | INDEL | * | map_l250_m0_e0 | * | 90.2439 | 94.8718 | 86.0465 | 97.7598 | 74 | 4 | 74 | 12 | 2 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m1_e0 | het | 97.7580 | 99.1701 | 96.3855 | 89.4826 | 478 | 4 | 480 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e0 | het | 97.8953 | 99.2218 | 96.6038 | 89.9048 | 510 | 4 | 512 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D1_5 | map_l150_m2_e1 | het | 97.8305 | 99.0421 | 96.6480 | 89.9495 | 517 | 5 | 519 | 18 | 3 | 16.6667 | |
| bgallagher-sentieon | INDEL | D6_15 | map_l100_m0_e0 | * | 95.6938 | 97.0874 | 94.3396 | 90.0094 | 100 | 3 | 100 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m1_e0 | * | 96.2305 | 96.0474 | 96.4143 | 88.2381 | 486 | 20 | 484 | 18 | 3 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e0 | * | 96.2251 | 95.9538 | 96.4981 | 89.5528 | 498 | 21 | 496 | 18 | 3 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l150_m2_e1 | * | 96.3108 | 96.0452 | 96.5779 | 89.6130 | 510 | 21 | 508 | 18 | 3 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m1_e0 | * | 93.2492 | 92.4528 | 94.0594 | 95.6068 | 98 | 8 | 95 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e0 | * | 93.6762 | 92.9204 | 94.4444 | 96.0497 | 105 | 8 | 102 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I1_5 | map_l250_m2_e1 | * | 93.7328 | 92.9825 | 94.4954 | 96.1389 | 106 | 8 | 103 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m1_e0 | het | 90.8495 | 89.8305 | 91.8919 | 87.8289 | 53 | 6 | 68 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e0 | het | 91.1243 | 90.1639 | 92.1053 | 88.7073 | 55 | 6 | 70 | 6 | 1 | 16.6667 | |
| cchapple-custom | INDEL | I6_15 | map_l100_m2_e1 | het | 91.1744 | 90.1639 | 92.2078 | 88.8081 | 55 | 6 | 71 | 6 | 1 | 16.6667 | |